View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5746_low_75 (Length: 271)

Name: NF5746_low_75
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5746_low_75
NF5746_low_75
[»] chr1 (11 HSPs)
chr1 (17-266)||(4872512-4872761)
chr1 (130-186)||(6326689-6326745)
chr1 (130-187)||(14508749-14508806)
chr1 (131-175)||(12535423-12535467)
chr1 (130-186)||(28239162-28239218)
chr1 (131-186)||(12532934-12532989)
chr1 (130-173)||(28231589-28231632)
chr1 (130-175)||(28326411-28326456)
chr1 (34-86)||(677215-677263)
chr1 (131-197)||(12540654-12540720)
chr1 (130-175)||(47569252-47569297)
[»] chr5 (1 HSPs)
chr5 (130-187)||(1717979-1718036)
[»] chr2 (2 HSPs)
chr2 (130-187)||(9066378-9066435)
chr2 (130-171)||(9068561-9068602)
[»] chr3 (1 HSPs)
chr3 (129-181)||(47924856-47924908)


Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 266
Target Start/End: Original strand, 4872512 - 4872761
Alignment:
Q  17 acataatatgcaggctgtgcaaagatagacttgtacgtacatcaagcctatgatttttattctgaaatgactgctaagaatatcagctttggttctacta 116  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4872512 acataatacgcaggctgtgcaaagatagacttgtacgtacatcaagcctatgatttttattctgaaatgactgctaagaatatcagctgtggttctacta 4872611  T
Q  117 tatatcgtaatctatctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttaggcaatttgggccagagccaccactttaca 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4872612 tatatcgtaatctatctaatctatggctattgcatcctcggtcaatttaaacaagcaatcaccttctttaggcaatttgggccagagccaccactttaca 4872711  T
Q  217 tccttccctgtccaagttttaatgttgcccttgcctctgcctttgctact 266  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  4872712 tccttccctgtccaagttttaatgttgcccttgcctctgcttttgttact 4872761  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 6326745 - 6326689
Alignment:
Q  130 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttcttta 186  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||    
T  6326745 atctaatctatggctattgcatcctcggtcaatttgaacaagcaattgccttgttta 6326689  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 14508806 - 14508749
Alignment:
Q  130 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttag 187  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||| ||||| |||||    
T  14508806 atctaatctatggttattgcatcgtcggtcaatttaaacaagcaattgccttgtttag 14508749  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 175
Target Start/End: Complemental strand, 12535467 - 12535423
Alignment:
Q  131 tctaatctatggctattgcatcctcggtcaatttaaacaagcaat 175  Q
    ||||||||||||||||||||||  |||||||||||||||||||||    
T  12535467 tctaatctatggctattgcatcaccggtcaatttaaacaagcaat 12535423  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 28239162 - 28239218
Alignment:
Q  130 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttcttta 186  Q
    ||||| ||||||| |||||||||||||||||||||||||| ||||| | ||||||||    
T  28239162 atctagtctatggttattgcatcctcggtcaatttaaacaggcaattgacttcttta 28239218  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 12532989 - 12532934
Alignment:
Q  131 tctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttcttta 186  Q
    ||||||||||||||||| ||||  ||||||||||||||||||||| ||||| ||||    
T  12532989 tctaatctatggctattacatcaacggtcaatttaaacaagcaattgccttgttta 12532934  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 173
Target Start/End: Original strand, 28231589 - 28231632
Alignment:
Q  130 atctaatctatggctattgcatcctcggtcaatttaaacaagca 173  Q
    ||||||||||||| |||||||||||||||||||||||| |||||    
T  28231589 atctaatctatggttattgcatcctcggtcaatttaaagaagca 28231632  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 175
Target Start/End: Original strand, 28326411 - 28326456
Alignment:
Q  130 atctaatctatggctattgcatcctcggtcaatttaaacaagcaat 175  Q
    ||||||||| ||||||||| ||| ||||||||||||||||||||||    
T  28326411 atctaatctttggctattgtatcatcggtcaatttaaacaagcaat 28326456  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 677215 - 677263
Alignment:
Q  34 tgcaaagatagacttgtacgtacatcaagcctatgatttttattctgaaatga 86  Q
    |||||||||||||||||||    |||||||||||||||| |||||||||||||    
T  677215 tgcaaagatagacttgtac----atcaagcctatgatttatattctgaaatga 677263  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 12540654 - 12540720
Alignment:
Q  131 tctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttaggcaatttggg 197  Q
    |||| |||||||||||||||||   ||||||||||| |||||||| ||||| |||||  ||||||||    
T  12540654 tctagtctatggctattgcatcactggtcaatttaagcaagcaattgccttgtttagagaatttggg 12540720  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 175
Target Start/End: Original strand, 47569252 - 47569297
Alignment:
Q  130 atctaatctatggctattgcatcctcggtcaatttaaacaagcaat 175  Q
    |||||| |||||| ||||||||||| |||||||| |||||||||||    
T  47569252 atctaacctatggttattgcatcctgggtcaattcaaacaagcaat 47569297  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 1717979 - 1718036
Alignment:
Q  130 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttag 187  Q
    ||||||||||||| ||||||||| | |||||||||||||||||||| ||||| |||||    
T  1717979 atctaatctatggttattgcatcgttggtcaatttaaacaagcaattgccttgtttag 1718036  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 9066378 - 9066435
Alignment:
Q  130 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttag 187  Q
    ||||||||||||| ||||| ||| ||||||||||||||| |||||| ||||| |||||    
T  9066378 atctaatctatggttattgtatcgtcggtcaatttaaaccagcaattgccttgtttag 9066435  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 171
Target Start/End: Original strand, 9068561 - 9068602
Alignment:
Q  130 atctaatctatggctattgcatcctcggtcaatttaaacaag 171  Q
    ||||||||||||||||||||||| | ||||||||||||||||    
T  9068561 atctaatctatggctattgcatcgttggtcaatttaaacaag 9068602  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 47924908 - 47924856
Alignment:
Q  129 tatctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgcctt 181  Q
    ||||||||| |||||||||||||| ||||| ||||||||||||| || |||||    
T  47924908 tatctaatcaatggctattgcatcatcggtgaatttaaacaagcgattgcctt 47924856  T

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