View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_low_78 (Length: 264)
Name: NF5746_low_78
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_low_78 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 12 - 264
Target Start/End: Original strand, 23334534 - 23334786
Alignment:
| Q |
12 |
tattcttataaactacaattaaagaaagcccaaagcataaataacaatctatatattgtgctaaactgtacttctaaacggtttctttttcaccacccaa |
111 |
Q |
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| T |
23334534 |
tattcttataaactacaattaaagaaagcccaaagcataaataacaatctatatattgtgctaaactgtacttctaaacggtttctttttcaccacccaa |
23334633 |
T |
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| Q |
112 |
aaacaaaaactattttcgaaatacaacaatagacatcataagactgtatttgtttcctaaaaaatatcacattcataaaactttaaaatacatttttcat |
211 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23334634 |
aaacaaaaactattttcgaaatacaaaaatagacatcataagactgtatttgtttcctaaaaaatatcacattcataaaactttaaaatacaattttcat |
23334733 |
T |
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| Q |
212 |
caagatgttataaatttaaaatcaccaacaatattgaaagttggtttaagtat |
264 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23334734 |
caagatgtaataaatttaaaatcaccaacaatattgaaagttggtttaagtat |
23334786 |
T |
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