View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_low_79 (Length: 262)
Name: NF5746_low_79
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_low_79 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 11 - 254
Target Start/End: Complemental strand, 1544423 - 1544181
Alignment:
| Q |
11 |
cacagacctaacatccttgagctaccaacgcagaaacaacacatgaaatggatgcaatgcaagatgaatcatgatcaatccaaagaaagtttttaaacaa |
110 |
Q |
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| T |
1544423 |
cacagacctaacatccttgagctaccaacgcagaaacaacacatgaaatggatgcaatgcaagatgaatcat-atcaatccaaagaaagtttttaaacaa |
1544325 |
T |
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| Q |
111 |
taaaattggaaagtcaatttatgaagattattagacacaccaacagtaggaatagtagatacaacttttccaatttgaagcttatagagtatagttgttt |
210 |
Q |
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| T |
1544324 |
taaaattggaaagtcaatttatgaagattattagacacaccaacagtaggaatagtagatacaacttttccaatttgaagcttatagagtatagttgttt |
1544225 |
T |
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| Q |
211 |
tgccagcattgtcaagaccaaccatcacaacctgtgatcagaag |
254 |
Q |
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| T |
1544224 |
tgccagcattgtcaagaccaaccatcacaacctgtgatcagaag |
1544181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 254
Target Start/End: Complemental strand, 1548276 - 1548042
Alignment:
| Q |
11 |
cacagacctaacatccttgagctaccaacgcagaaacaacacatgaaatggatgcaatgcaagatgaatcatgatcaatccaaagaaagtttttaaacaa |
110 |
Q |
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| T |
1548276 |
cacagacgtaacatccttgagctaccaacgcagaaacaacacatgaaatggatgcaacgcaagatgaatcatgatcaatctaaagaaagtttttaaac-- |
1548179 |
T |
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| Q |
111 |
taaaattggaaagtcaatttatgaagattattagacacaccaacagtaggaatagtagatacaacttttccaatttgaagcttatagagtatagttgttt |
210 |
Q |
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| T |
1548178 |
------tggaaagtcaatt-atgaagattattagacacaccaattgtaggaatagtagatacaacttttccaatttgaagcttatagagtatagttgttt |
1548086 |
T |
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| Q |
211 |
tgccagcattgtcaagaccaaccatcacaacctgtgatcagaag |
254 |
Q |
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| T |
1548085 |
tgccagcattgtcaagaccaaccatcacaacctgtgatcagaag |
1548042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 245
Target Start/End: Complemental strand, 1540383 - 1540287
Alignment:
| Q |
149 |
accaacagtaggaatagtagatacaacttttccaatttgaagcttatagagtatagttgttttgccagcattgtcaagaccaaccatcacaacctgt |
245 |
Q |
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| T |
1540383 |
accaatagtgggaacagtagataaaacttcaccaatgtgaagtttgtagagaatagtagttttgccagcagcatcaagaccaagcatcacaacctgt |
1540287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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