View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_low_8 (Length: 611)
Name: NF5746_low_8
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 1 - 594
Target Start/End: Original strand, 29098587 - 29099176
Alignment:
| Q |
1 |
atgatggtgcataaactgatccatggactctcacattcttgagacaggtaagtagtcgcgtgggattgaatgtccatggagctccccttctggcatttgc |
100 |
Q |
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| T |
29098587 |
atgatggtgcataaactgatccatggactctcacattcttgagacaggtaagtagtcgcgtgggattgaatgtccatggagctccccttctggcatgtgc |
29098686 |
T |
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| Q |
101 |
ttcctcaggattcttcatagcatctagttcagaacgataaagatgaaaaccatccatgggaatcacaatagcaacgtcaggaggttgaacctgagagtca |
200 |
Q |
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| T |
29098687 |
ttcctcgggattcttcatagcatctagttcagaacgataaagatgaaaaccatccatgcgaatcacaatagcaacatcaggaggttgaacctgagagtca |
29098786 |
T |
|
| Q |
201 |
aaggaagaagctttctctggccaaagcttgtttatgcgtttggctacttcatgcgctatggtgctttttccagcaccaggtggaccagccaggccaacaa |
300 |
Q |
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| T |
29098787 |
aaggaagaagttttctctggccaaagcttgtttatgcgtttggctacttcatgcgctatggtgctttttccagcaccaggtggaccagccaggccaacaa |
29098886 |
T |
|
| Q |
301 |
aaaatttataattaggatttaacgacattgacgctggaggcagaattcgtttaaccaatgtctcatatatctcatcaacaccacttcttccctctacaac |
400 |
Q |
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| T |
29098887 |
aaactttataattaggatttaacgacattgacgctggaggcagaattcgtttaaccaatgtatcatatatctcatcaacacca---cttccctctacaac |
29098983 |
T |
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| Q |
401 |
ttgaacatgatccttttcagtagattaaaccttgaagagattactcttgttagtgcgatcgcgtgttgaagaaaatgataattgaacaaatttgttacgc |
500 |
Q |
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| T |
29098984 |
ttgaacatgatccttttcagtagataaaaccttgaagagattactcttgttagtgcgatcgcgtgttgaagaaaatgataattgaacaaatttgttacac |
29099083 |
T |
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| Q |
501 |
cgcgcgatggatcattgaacacgaattccaaccgcgagtgattgattttgttatcggcaaggaaggaatttttcccgtcgttgaggagaaggtt |
594 |
Q |
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| T |
29099084 |
cgcgcgatgga-gattgaacacgaattccgaccgccagtgattgattttgttatcggcaaggaaggaatttttcccgtcgttgaggagaaggtt |
29099176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 113 - 305
Target Start/End: Original strand, 38537783 - 38537975
Alignment:
| Q |
113 |
cttcatagcatctagttcagaacgataaagatgaaaaccatccatgggaatcacaatagcaacgtcaggaggttgaacctgagagtcaaaggaagaagct |
212 |
Q |
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| T |
38537783 |
cttcaaagcatctagttcagaacgataaagatgaaaaccatccatgggaatcacaatagcaacgtcaggaggttgaacctgagagtcaaaggaagaagct |
38537882 |
T |
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| Q |
213 |
ttctctggccaaagcttgtttatgcgtttggctacttcatgcgctatggtgctttttccagcaccaggtggaccagccaggccaacaaaaaat |
305 |
Q |
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| T |
38537883 |
ttctctggccaaagcttgtttatgcgtttggctacttcatgcgctatggtgctttttccagcaccaggtggaccagccaggccaacaaaaaat |
38537975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 306 - 385
Target Start/End: Original strand, 38538176 - 38538255
Alignment:
| Q |
306 |
ttataattaggatttaacgacattgacgctggaggcagaattcgtttaaccaatgtctcatatatctcatcaacaccact |
385 |
Q |
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| T |
38538176 |
ttataattaggatttaacgacactgacgctggaggcataattcgtttaaccaatgtatcatatatctcatcaacaccact |
38538255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 464 - 560
Target Start/End: Original strand, 38538567 - 38538662
Alignment:
| Q |
464 |
tgttgaagaaaatgataattgaacaaatttgttacgccgcgcgatggatcattgaacacgaattccaaccgcgagtgattgattttgttatcggcaa |
560 |
Q |
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| T |
38538567 |
tgttgaagaaaatgataattgcgcggatttgttacgcggcgcgatggag-agtgaacacggattccgatcgcgagtgattgattttgttatcggcaa |
38538662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 38537197 - 38537258
Alignment:
| Q |
22 |
catggactctcacattcttgagacaggtaagtagtcgcgtgggattgaatgtccatggagct |
83 |
Q |
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| T |
38537197 |
catgaactctcagattcttgagacaggtaagcagtcgcgtaggattgaatgtccatggagct |
38537258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 432
Target Start/End: Original strand, 38538326 - 38538371
Alignment:
| Q |
387 |
cttccctctacaacttgaacatgatccttttcagtagattaaacct |
432 |
Q |
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| T |
38538326 |
cttccctctacaacttgaacatgatcttcttcagaagataaaacct |
38538371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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