View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_low_81 (Length: 260)
Name: NF5746_low_81
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_low_81 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 10798555 - 10798788
Alignment:
| Q |
11 |
cacagaaaagtaaggnnnnnnnctcctaaccggctccttttgataccgcgctcttgagtaaagtgattggtacataaccagcttctaccttcagcaatac |
110 |
Q |
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| T |
10798555 |
cacagaaaagtaaggaaaaaaactcctaaccggctccttttgataccgcgctcttgagtaaagtgattggtacataaccagcttctaccttcagcaatac |
10798654 |
T |
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| Q |
111 |
cagtacaaacaccagaatatttaactttaaccattggcttaatcttgtgttcttcattctgcacaaatcaaacaaatatgaaacaataaacctatgagtc |
210 |
Q |
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| T |
10798655 |
cagtacaaacaccagaatatttaactttaaccattggcttaatcttgtgttcttcattctgcacaaatcaaacaaatatgaaacaataaacctatgagtc |
10798754 |
T |
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| Q |
211 |
tccctttgtaactcaaggaataaggctagtgaat |
244 |
Q |
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| T |
10798755 |
tccctttgtaactcaaggaataaggctagtgaat |
10798788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 72 - 194
Target Start/End: Complemental strand, 18761309 - 18761187
Alignment:
| Q |
72 |
agtgattggtacataaccagcttctaccttcagcaataccagtacaaacaccagaatatttaactttaaccattggcttaatcttgtgttcttcattctg |
171 |
Q |
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|||| |||||||| || |||||||| |||||||||||||||||| || |||||||| ||||||||||||||||||| |||| ||||| ||| |||||| |
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| T |
18761309 |
agtggttggtacaaaatcagcttctgccttcagcaataccagtaaaatcaccagaaggtttaactttaaccattggcctaattttgtgctctccattcta |
18761210 |
T |
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| Q |
172 |
cacaaatcaaacaaatatgaaac |
194 |
Q |
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| T |
18761209 |
cacaaatctaacaaatatgaaac |
18761187 |
T |
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