View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_low_82 (Length: 260)
Name: NF5746_low_82
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_low_82 |
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Alignment Details
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 8135855 - 8136034
Alignment:
| Q |
1 |
gatttggtatgaacaatgtaccataacatttcatggatatgtttgatctaatcgtcaaaaatagnnnnnnnnnnnnnnnn--aataatgataaaaagtag |
98 |
Q |
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| T |
8135855 |
gatttggtatgaacaatgtaccataacatttcatggatatgtttgatctaatcgtcaaaaatagtttttattttttatttttaataatgataaaaagtag |
8135954 |
T |
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| Q |
99 |
ttgtgcatcatacaacacttgattcacttgtgcatatcagaataagtcatgttttaaaaaatataagtcgatccatttta |
178 |
Q |
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| T |
8135955 |
ttgtgcatcatacaacacttgattcacttgtgcatattagaataagtcatgttttaaaaaatataagtcgatccatttta |
8136034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 246
Target Start/End: Original strand, 8136032 - 8136088
Alignment:
| Q |
190 |
ttaagttagaaaatttatttagagagaaannnnnnnnaataaaggacgagatacttg |
246 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8136032 |
ttaagttagaaaatttatttagagagaaattttttttaataaaggacgagatacttg |
8136088 |
T |
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