View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5746_low_87 (Length: 250)

Name: NF5746_low_87
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5746_low_87
NF5746_low_87
[»] chr3 (4 HSPs)
chr3 (1-239)||(23334318-23334556)
chr3 (36-141)||(33843213-33843319)
chr3 (36-130)||(10495056-10495150)
chr3 (206-239)||(12718271-12718304)
[»] chr6 (4 HSPs)
chr6 (34-186)||(28546625-28546778)
chr6 (206-239)||(20819193-20819226)
chr6 (90-130)||(303506-303546)
chr6 (90-130)||(34949288-34949328)
[»] chr7 (3 HSPs)
chr7 (36-122)||(1851849-1851935)
chr7 (90-195)||(26188445-26188551)
chr7 (107-198)||(1377209-1377301)
[»] chr8 (2 HSPs)
chr8 (32-198)||(21269261-21269428)
chr8 (90-130)||(29544158-29544198)
[»] chr4 (1 HSPs)
chr4 (39-130)||(39807616-39807707)
[»] chr2 (1 HSPs)
chr2 (34-153)||(21649986-21650105)
[»] chr1 (4 HSPs)
chr1 (90-198)||(33936662-33936770)
chr1 (92-144)||(29913583-29913635)
chr1 (170-198)||(34549693-34549721)
chr1 (90-130)||(44496238-44496278)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 23334556 - 23334318
Alignment:
Q  1 tttaattgtagtttataagaatagtttagcaaaaagactattactttttccaccctccactgttctcatgcgccctgtaaaaaagatacaaataccccta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  23334556 tttaattgtagtttataagaatagtttagcaaaaagactattactttttccaccctccactgttctcgtgcgccctgtaaaaaagatacaaatatcccta 23334457  T
Q  101 gtccgaattatgtaatccgaaccagattgtcggagtttttcggattataaaatccgacagttacgatatgtgattttttgtgttttatttgatgtcaagg 200  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23334456 gtccggattatgtaatccgaaccagattatcggagtttttcggattataaaatccgacagttacgatatgtgattttttgtgttttatttgatgtcaagg 23334357  T
Q  201 caacgaataaaccaaggcagcaagatctatctatatatt 239  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  23334356 caacaaataaaccaaggcagcaagatctatctatatatt 23334318  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 141
Target Start/End: Original strand, 33843213 - 33843319
Alignment:
Q  36 gactattactttttccaccctccactgttctcatgcgccctgtaaaaaagatacaa-atacccctagtccgaattatgtaatccgaaccagattgtcgga 134  Q
    ||||||||||||| || |||||| |||||| || ||| |||| |||||| | | || |||||||||||||||||||||||||  ||||||||||||  ||    
T  33843213 gactattacttttcccgccctcctctgttcgcacgcgtcctgcaaaaaatacaaaagatacccctagtccgaattatgtaatttgaaccagattgttaga 33843312  T
Q  135 gtttttc 141  Q
    |||||||    
T  33843313 gtttttc 33843319  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 130
Target Start/End: Complemental strand, 10495150 - 10495056
Alignment:
Q  36 gactattactttttccaccctccactgttctcatgcgccctgtaaaaaagatacaaatacccctagtccgaattatgtaatccgaaccagattgt 130  Q
    ||||||||||||| ||||||||||||||| ||    | |||| |||||| | | |||||||||||||  | ||||||||||| |||| |||||||    
T  10495150 gactattacttttcccaccctccactgttttcgctggacctgcaaaaaatacaaaaatacccctagtttggattatgtaatctgaacgagattgt 10495056  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 239
Target Start/End: Original strand, 12718271 - 12718304
Alignment:
Q  206 aataaaccaaggcagcaagatctatctatatatt 239  Q
    ||||||| ||||||||||||||||||||||||||    
T  12718271 aataaacaaaggcagcaagatctatctatatatt 12718304  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 186
Target Start/End: Original strand, 28546625 - 28546778
Alignment:
Q  34 aagactattactttttccaccctccactgttctcatgcgccctgtaaaaaagatacaaatacccctagtccgaattatgtaatccgaaccagattgtcgg 133  Q
    |||||| ||||||||||||||||||  |||||||   ||||||| | |||||||| ||||| | | ||||||||||||||||||  || ||||||||  |    
T  28546625 aagactgttactttttccaccctcctatgttctcgcacgccctgcataaaagatagaaatatctcaagtccgaattatgtaatcgaaatcagattgttag 28546724  T
Q  134 agtttttcggattataaaatccg-acagttacgatatgtgattttttgtgtttt 186  Q
    |||||||  ||||| |||||| | |||||| |||  | ||||||||||||||||    
T  28546725 agttttttagattacaaaatcagaacagtttcgacctatgattttttgtgtttt 28546778  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 239
Target Start/End: Original strand, 20819193 - 20819226
Alignment:
Q  206 aataaaccaaggcagcaagatctatctatatatt 239  Q
    ||||||||||| ||||||||||||||||||||||    
T  20819193 aataaaccaagacagcaagatctatctatatatt 20819226  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 303506 - 303546
Alignment:
Q  90 aaatacccctagtccgaattatgtaatccgaaccagattgt 130  Q
    |||||||||| ||||| ||||||||||||| ||||||||||    
T  303506 aaatacccctggtccggattatgtaatccggaccagattgt 303546  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 34949288 - 34949328
Alignment:
Q  90 aaatacccctagtccgaattatgtaatccgaaccagattgt 130  Q
    |||||||||| ||||| |||| |||||||||||||||||||    
T  34949288 aaatacccctggtccggattacgtaatccgaaccagattgt 34949328  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 1851849 - 1851935
Alignment:
Q  36 gactattactttttccaccctccactgttctcatgcgccctgtaaaaaagatacaaatacccctagtccgaattatgtaatccgaac 122  Q
    |||||||||||||  |||||||| |||||||| |||| |||| ||||| || |||||||||||| ||| | ||||||||||||||||    
T  1851849 gactattacttttctcaccctcctctgttctcgtgcgtcctggaaaaaggacacaaatacccctggtctgcattatgtaatccgaac 1851935  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 195
Target Start/End: Complemental strand, 26188551 - 26188445
Alignment:
Q  90 aaatacccctagtccgaattatgtaatccgaaccagattgtcggagtttttcggattataaaatccg-acagttacgatatgtgattttttgtgttttat 188  Q
    ||||||||||||| || |||||||||||||||| |||||||   || ||| ||||  | ||||| || | |||| ||||||| ||||||| ||||||| |    
T  26188551 aaatacccctagttcggattatgtaatccgaactagattgttaaagatttccggaaaacaaaattcgtatagtttcgatatgagatttttggtgttttct 26188452  T
Q  189 ttgatgt 195  Q
    |||||||    
T  26188451 ttgatgt 26188445  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 198
Target Start/End: Original strand, 1377209 - 1377301
Alignment:
Q  107 attatgtaatccgaaccagattgtcggagtttttcggattataaaatccga-cagttacgatatgtgattttttgtgttttatttgatgtcaa 198  Q
    ||||| ||||| ||||||||| || |||||||||||| ||| ||||||||  || || | | ||||||||||| ||||||| ||||| |||||    
T  1377209 attatataatctgaaccagatcgttggagtttttcggtttacaaaatccggtcaatttcaaaatgtgatttttggtgttttctttgaagtcaa 1377301  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 198
Target Start/End: Complemental strand, 21269428 - 21269261
Alignment:
Q  32 aaaagactattactttttccaccctccactgttctcatgcgccctgtaaaaaagatacaaatacccctagtccgaattatgtaatccgaaccagattgtc 131  Q
    |||||||||| ||||||||||||||||| |||||||  | |||| | | |||| | | ||||| | ||||| || ||||||||||||||||||||||||     
T  21269428 aaaagactatcactttttccaccctccattgttctcgcgtgcccagaagaaaatacaaaaatatctctagttcggattatgtaatccgaaccagattgtt 21269329  T
Q  132 ggagtttttcggattataaaatccgaca-gttacgatatgtgattttttgtgttttatttgatgtcaa 198  Q
     |   |||| ||| ||  || ||||| |  ||||||| ||||||||| |||||||| |||||||||||    
T  21269328 agcagttttaggactacgaattccgatatattacgatctgtgattttatgtgttttctttgatgtcaa 21269261  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 29544158 - 29544198
Alignment:
Q  90 aaatacccctagtccgaattatgtaatccgaaccagattgt 130  Q
    |||||||||| ||||||||||| ||||||| ||||||||||    
T  29544158 aaatacccctggtccgaattatataatccggaccagattgt 29544198  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 130
Target Start/End: Complemental strand, 39807707 - 39807616
Alignment:
Q  39 tattactttttccaccctccactgttctcatgcgccctgtaaaaaagatacaaatacccctagtccgaattatgtaatccgaaccagattgt 130  Q
    |||||||||| ||||||||| ||||||||  | ||| || |||||||| || ||||||||| ||||| ||||||||||| ||||| ||||||    
T  39807707 tattacttttcccaccctcctctgttctcgcgtgccgtgcaaaaaagacaccaatacccctggtccggattatgtaatctgaaccggattgt 39807616  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 153
Target Start/End: Complemental strand, 21650105 - 21649986
Alignment:
Q  34 aagactattactttttccaccctccactgttctcatgcgccctgtaaaaaagatacaaatacccctagtccgaattatgtaatccgaaccagattgtcgg 133  Q
    |||||||||||| |||||| |||   || ||||||||||||||| ||||| || | ||||||| || || || ||||| ||||| ||||||||||||  |    
T  21650105 aagactattactatttccatccttagctattctcatgcgccctgcaaaaatgacaaaaatacctctggttcggattatataatctgaaccagattgttag 21650006  T
Q  134 agtttttcggattataaaat 153  Q
      ||||||||||||||||||    
T  21650005 catttttcggattataaaat 21649986  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 198
Target Start/End: Original strand, 33936662 - 33936770
Alignment:
Q  90 aaatacccctagtccgaattatgtaatccgaaccagattgtcggagtttttcggattataaaa-tccgacagttacgatatgtgattttttgtgttttat 188  Q
    |||||||||| ||||||||||||||||||||||||| ||||  ||| |||  ||| ||||||| || ||||  | ||||||| ||||||| ||||||| |    
T  33936662 aaatacccctggtccgaattatgtaatccgaaccag-ttgttagagatttctggaatataaaattcggacaaattcgatatgagatttttggtgttttct 33936760  T
Q  189 ttgatgtcaa 198  Q
    ||||||||||    
T  33936761 ttgatgtcaa 33936770  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 29913583 - 29913635
Alignment:
Q  92 atacccctagtccgaattatgtaatccgaaccagattgtcggagtttttcgga 144  Q
    |||||| | |||| |||||||||||||||||||||||||  ||| ||||||||    
T  29913583 atacccgtggtccaaattatgtaatccgaaccagattgttagagattttcgga 29913635  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 198
Target Start/End: Original strand, 34549693 - 34549721
Alignment:
Q  170 gtgattttttgtgttttatttgatgtcaa 198  Q
    |||||||||||||||||||||||||||||    
T  34549693 gtgattttttgtgttttatttgatgtcaa 34549721  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 44496238 - 44496278
Alignment:
Q  90 aaatacccctagtccgaattatgtaatccgaaccagattgt 130  Q
    ||||| |||| ||||||||||||||||||| ||||||||||    
T  44496238 aaataaccctggtccgaattatgtaatccggaccagattgt 44496278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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