View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_low_90 (Length: 245)
Name: NF5746_low_90
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_low_90 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 228
Target Start/End: Original strand, 55471635 - 55471853
Alignment:
| Q |
10 |
agcataggtatggattctttaggagtcaatgaacatagccattcagaccggagatctgaaggagaaggtaatatgcacagaaaactccaattagttttaa |
109 |
Q |
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| T |
55471635 |
agcataagtatggattctttaggagtcaatgaacatagcccttcagacctgagatctgaaggagaaggtaatatgcacagaaaactccaattagttttaa |
55471734 |
T |
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| Q |
110 |
tcaaattagctaaagggcaagacttttttcatcacaaattaaattattgtgtttaaaagaagatgagtacaagtgtttccagtataagtgcaggaaagtg |
209 |
Q |
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| T |
55471735 |
tcaaattagctaaagagcaagacttttttcatcacaaattaaattattgtgtttaaaagaagatgagtacaagtgtttccagtataagtgcaggaaaatg |
55471834 |
T |
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| Q |
210 |
gattttacgatatgcttct |
228 |
Q |
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| T |
55471835 |
gattttacgatatgcttct |
55471853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 55439928 - 55439748
Alignment:
| Q |
19 |
atggattctttaggagtcaatgaacatagccattcagaccggagatctgaaggagaaggtaatatgcacagaaaactccaattagttttaatcaaattag |
118 |
Q |
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|||||||||| ||| ||||||| |||||||| |||||||| ||| |||||||||||||||||| |||||||||||||||||||| ||| ||||||| | | |
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| T |
55439928 |
atggattcttcaggtgtcaatggacatagcccttcagacctgagctctgaaggagaaggtaatctgcacagaaaactccaattactttaaatcaaagttg |
55439829 |
T |
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| Q |
119 |
ctaaagggcaagacttttttcatcacaaa--ttaaattattgtgtttaaaagaagatgagtacaagtgtttccagtataagtg |
199 |
Q |
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| T |
55439828 |
ctaaagag--aaacatttttcatctcaaaattaaaattattgtgtttaaaagaagacgagtacaagtgtttccagtataagtg |
55439748 |
T |
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