View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_low_98 (Length: 237)
Name: NF5746_low_98
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_low_98 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 4305747 - 4305976
Alignment:
| Q |
1 |
aagagattcctattttgggaaactccaggtacaaacatgttcttttttctacttaacttaacaagttcattaattcataccagtagtatataacatggtc |
100 |
Q |
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| T |
4305747 |
aagagattcctattttgggaaactccaggtgcaaacatgttcttttttctacttaacttaacaagttcattaattcataccagtagtatataacatggtc |
4305846 |
T |
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| Q |
101 |
aatttgcattaagttaattgttaaagttgttttattacagtgtaatgaaggctaatattaagaaggaagagcctaaatgtgcacaaatgacaatcttgta |
200 |
Q |
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| T |
4305847 |
aatttgcattaagttaattgttaaagttgttttattacagtgtaatgaaggctaatattaagaaggaagagcctaaatgtgcacaaatgacaatcttgta |
4305946 |
T |
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| Q |
201 |
tgatgggaaagtaattgtgtttgatgatgt |
230 |
Q |
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| T |
4305947 |
tgatgggaaagtaattgtgtttgatgatgt |
4305976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 72 - 230
Target Start/End: Original strand, 4311172 - 4311333
Alignment:
| Q |
72 |
aattcataccagtagtatataacatggtcaatttgcattaagttaattgttaaagttgttt---tattacagtgtaatgaaggctaatattaagaaggaa |
168 |
Q |
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| T |
4311172 |
aattcatactagaagtatatagcatggtcaatttgcattaaattaattgttaatgttgtttaattattacagtgtaatgaaggctaatattaagaaggag |
4311271 |
T |
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| Q |
169 |
gagcctaaatgtgcacaaatgacaatcttgtatgatgggaaagtaattgtgtttgatgatgt |
230 |
Q |
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| T |
4311272 |
gagcctagttgtgcacaaatgacaatcttttatgatgggaaagtaattgtgtttgatgatgt |
4311333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 89 - 228
Target Start/End: Original strand, 4300774 - 4300913
Alignment:
| Q |
89 |
tataacatggtcaatttgcattaagttaattgttaaagttgttttattacagtgtaatgaaggctaatattaagaaggaagagcctaaatgtgcacaaat |
188 |
Q |
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| T |
4300774 |
tataacatggtcaatttgcattaaattaattgttaatgttgttttattacagtgtaatgaaggctaatattatcaaggaagagcctaaatgtacccaaat |
4300873 |
T |
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| Q |
189 |
gacaatcttgtatgatgggaaagtaattgtgtttgatgat |
228 |
Q |
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| T |
4300874 |
gacaattttttatgatgggaaaataattgtgtttgatgat |
4300913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 4294311 - 4294376
Alignment:
| Q |
163 |
aaggaagagcctaaatgtgcacaaatgacaatcttgtatgatgggaaagtaattgtgtttgatgat |
228 |
Q |
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| T |
4294311 |
aaggaagagcctagatgtgcacaaatgacaattttttatgatgggaaagtaattgtgtttgatgat |
4294376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 4311077 - 4311130
Alignment:
| Q |
1 |
aagagattcctattttgggaaactccaggtacaaacatgttcttttttctactt |
54 |
Q |
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| T |
4311077 |
aagagattcctattttgggaaactccaggtacatacatgttcttttttctactt |
4311130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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