View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5747-Insertion-2 (Length: 1034)
Name: NF5747-Insertion-2
Description: NF5747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5747-Insertion-2 |
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| [»] scaffold0188 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 870; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 870; E-Value: 0
Query Start/End: Original strand, 8 - 1022
Target Start/End: Complemental strand, 50966124 - 50965101
Alignment:
| Q |
8 |
gttttgtgatccaagagtttcaatcagcctcaacaatcacctaacagatggaattttccagaaagttgatcatttgacaagttatgcattggggnnnnnn |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
50966124 |
gttttgtgatccaagagtttcaatcagcctcaacaatcacctaacagatggaattttctagaaagttgatcatttgacaagttatgcattggggaaaaaa |
50966025 |
T |
|
| Q |
108 |
ngaagataaataaccatgacaattttatcaatgttattcctttccaattcactttgtactatatcttattttattttcgctcactattggataccggttt |
207 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50966024 |
agaagataaataaccatgagaattttatcaatgttattcctttccaattcactttgtactatatcttattttattttcgctcactattggataccggttt |
50965925 |
T |
|
| Q |
208 |
agtggaaatttattttgtcgaaggagagtattgacggtgaaaactgtattctactgagaaagtgatcactcgtttgaattttgacggctcttttcgttcg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50965924 |
agtggaaatttattttgtcgaaggagagtattgacggtgaaaactgtattctactgagaaagtgatcactcgtttgaattttgacggctcttttcgt--- |
50965828 |
T |
|
| Q |
308 |
tcaccaacacgtttgnnnnnnn-----------acttcaaatctgaattttgatttttagtgcttctattggcaaaaatataacattttgacggctcagc |
396 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50965827 |
-caccaacacatttgttttttttttttttttttacttcaaatctgaattttgatttttagtgcttctattggcaaaaatataacattttgacggctcagc |
50965729 |
T |
|
| Q |
397 |
cacgcgttcacacaaccagggtcagtccgataattgttcctttgcatacacgctgacaattccatttatattattattcatactatttgggtctctgaga |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50965728 |
cacgcgttcacacaaccagggtcagtccgataattgttcctttgcatacacgctgacaattccatttatattattattcatactatttgggtctctgaga |
50965629 |
T |
|
| Q |
497 |
ttgnnnnnnnttgttcttttcggaggattatcatttcctaattttttattaccactactagctttggttttgaatttggtgtttgtgtgcaatggaggga |
596 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50965628 |
ttgaaaaaaattgttcttttcggaggattatcatttcctaattttttattaccactactagctttggttttgaatttggtgtttgtgtgcaatggaggga |
50965529 |
T |
|
| Q |
597 |
taactagtacttttgttagaaaagtcgaaaagggcgttaatatgtctcttgatagcgatgtgtttattgttccattctggttataatgctccccgatagg |
696 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
50965528 |
taactagtacttttgttagaaaagtcgaaaagggcgttaatatgtctcttgatagcgatgtgtttattgttccattctggttataaggctccccgatagg |
50965429 |
T |
|
| Q |
697 |
ttcatataacaggtgatcttgttgggaaagccgtgatcgtatcgtgtgtgactatcgactaaagatgaaccagggtgaacacagtgtgttactggagtta |
796 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50965428 |
ttcatataacaggtgatcttgttgggaaagccgtgatcgtatcgtgtgtgactatcgactaaagatgaaccagggtgaacacagtgtgttactggagtta |
50965329 |
T |
|
| Q |
797 |
tcaacattgttatgtaatggcatgcccaacaagcagaagaagtcgtgtgatgaatagttgatgcatgtggagtacaactccaaattgttagcatagaaac |
896 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50965328 |
tcaacattgttatgtaatggcatgcccaacaagcagaagaagtagtgtgatgaatagttgatgcatgtggagtacaactccaaattgttagcatagaaac |
50965229 |
T |
|
| Q |
897 |
caacatgacatgataagtaaccaaatagctggcacagatatgattatgtaatggcatctttgttaagtgaccaaaagcatagaaaccaacatgtcag-ac |
995 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
50965228 |
caacatgacatgataagtaaccaaatagctggcacagatatgattatgtaatggcatctttgttaagtgaccaaaagcatagaaaccaacatgtcagaac |
50965129 |
T |
|
| Q |
996 |
caca-gcagagtacattagcatccagag |
1022 |
Q |
| |
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|||| ||||||||||||||||| ||||| |
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| T |
50965128 |
cacaggcagagtacattagcattcagag |
50965101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 538 - 748
Target Start/End: Complemental strand, 50981771 - 50981562
Alignment:
| Q |
538 |
ttttttattaccactactagctttggttttgaatttggtgtttgtgtgcaatggagggataactagtacttttgttagaaaagtcgaaaagggcgttaat |
637 |
Q |
| |
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|||||||||||||||| ||||| ||||||||||| |||| |||||| |||||||| | ||| ||| |||||||||| || || | || ||||||||| |
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| T |
50981771 |
ttttttattaccacta---gctttagttttgaatttagtgtctgtgtgtaatggaggcacaaccagtgcttttgttaggaatgttcagaaaggcgttaat |
50981675 |
T |
|
| Q |
638 |
atgtctcttgatagcgatgtgtttattgttccattctggttataatgctccccgataggttcatataac---aggtgatcttgttgggaaagccgtgatc |
734 |
Q |
| |
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||||| |||||||| ||||| ||| |||||| |||||||||||||||||||| | |||||||||| || |||||||||||||||||||| |||||| |
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| T |
50981674 |
atgtcacttgatagtgatgtttttgctgttcc-ttctggttataatgctccccaacaggttcatattacacaaggtgatcttgttgggaaagaagtgatc |
50981576 |
T |
|
| Q |
735 |
gtatcgtgtgtgac |
748 |
Q |
| |
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|||||||| ||||| |
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| T |
50981575 |
gtatcgtgggtgac |
50981562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 5e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 559 - 690
Target Start/End: Original strand, 13636555 - 13636685
Alignment:
| Q |
559 |
tttggttttgaatttggtgtttgtgtgcaatggagggataactagtacttttgttagaaaagtcgaaaagggcgttaatatgtctcttgatagcgatgtg |
658 |
Q |
| |
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||||||||||||||||||||||||||| |||||||| | |||||||||||||||||| ||||| || ||| | || ||||| | |||||||| ||||| |
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| T |
13636555 |
tttggttttgaatttggtgtttgtgtgtaatggaggcagaactagtacttttgttaggaaagttgagaagaccattgatatgccacttgatagtgatgtt |
13636654 |
T |
|
| Q |
659 |
tttattgttccattctggttataatgctcccc |
690 |
Q |
| |
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||| |||||| |||||||||||||||||||| |
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| T |
13636655 |
tttgatgttcc-ttctggttataatgctcccc |
13636685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188 (Bit Score: 47; Significance: 3e-17; HSPs: 1)
Name: scaffold0188
Description:
Target: scaffold0188; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 522 - 688
Target Start/End: Original strand, 8190 - 8355
Alignment:
| Q |
522 |
gattatcatttcctaattttttattaccactactagctttggttttgaatttggtgtttgtgtgcaatggagggataactagtacttttgttagaaaagt |
621 |
Q |
| |
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||||||||||| ||| |||||||||| | ||||| ||||||||||||||||||||||||||| |||||| | || |||| ||||||||| || || |
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| T |
8190 |
gattatcattttctagttttttattattatcactaggtttggttttgaatttggtgtttgtgtgtaatggaagttccacaagtatttttgttaggaaggt |
8289 |
T |
|
| Q |
622 |
cgaaaagggcgttaatatgtctcttgatagcgatgtgtttattgttccattctggttataatgctcc |
688 |
Q |
| |
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|| ||| || || ||||| | |||||||||||||| |||| |||||| |||||||||||||||| |
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| T |
8290 |
tgagaagagcattgatatgccacttgatagcgatgtttttagggttcca-cctggttataatgctcc |
8355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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