View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5747-Insertion-4 (Length: 368)
Name: NF5747-Insertion-4
Description: NF5747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5747-Insertion-4 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 12 - 368
Target Start/End: Complemental strand, 9232075 - 9231719
Alignment:
| Q |
12 |
gttgcaatctaattcataccttgtgtttccacagtggcctggatcggttttgagacgaaaaggatatgttatgttgcgaattttgccgcaagatgaagtt |
111 |
Q |
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| T |
9232075 |
gttgcaatctaattcgtaccttgtgtctccgcagtgatttggatcggttttgagacgaaatggatatgttatgttgcgaattttgccgcaagatgaagtt |
9231976 |
T |
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| Q |
112 |
ggacatggttggtgattcttagctagacaattttgatggaataggataaaaattgaagcaaatatttttaccaatgtttgtagttgtacaaatgatgaac |
211 |
Q |
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| T |
9231975 |
ggacatggttggtgatgcttagctagacaattttgatggaataggataaaaattgaagcaaatatttttaccaatgtttgtagttgtacaaatgatgaac |
9231876 |
T |
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| Q |
212 |
aagaaaatcgagcttgtcttttcatcattcaagtcttcnnnnnnntatgaaattttttaaaacaagccctcatgagaaaatgttgtgattggtttatgtt |
311 |
Q |
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| T |
9231875 |
aagaaaattgagcttgtcttttcatcattcaagtcttcaaaaaaatatgaaattttttaaaacaagccctcatgagaaaatgttgtgattggtttatgtt |
9231776 |
T |
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| Q |
312 |
tttaaattttataaatgtgtcaatcatttatcattaggttgccaccatatctagctg |
368 |
Q |
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| T |
9231775 |
ttttaattttataaatgggtcaatcatttatcattaggttgccaccatatctagctg |
9231719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 9386566 - 9386733
Alignment:
| Q |
8 |
tttcgttgcaatctaattcataccttgtgtttccacagtggcctggatcggttttgagacgaaaaggatatgttatgttgcgaattttgccgcaagatga |
107 |
Q |
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| T |
9386566 |
tttcgttgcaatctaattcataccttttgtccccacagtggtttggatcagttttgagacgaaatgggtatgttatgttggtgattttgccgcatgatga |
9386665 |
T |
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| Q |
108 |
agttggacatggttggtgattcttagctagacaattttgatggaataggataaaaattgaagcaaata |
175 |
Q |
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| T |
9386666 |
cgttgggcatggttggtgatgcttagcaagacaattttgatgagaaatgagaagaattgaagcaaata |
9386733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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