View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5747-Insertion-5 (Length: 360)

Name: NF5747-Insertion-5
Description: NF5747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5747-Insertion-5
NF5747-Insertion-5
[»] chr4 (6 HSPs)
chr4 (58-253)||(44275898-44276102)
chr4 (245-306)||(44275644-44275705)
chr4 (227-306)||(46462406-46462484)
chr4 (325-360)||(44275587-44275622)
chr4 (250-303)||(21142138-21142191)
chr4 (227-303)||(46462419-46462494)
[»] chr2 (1 HSPs)
chr2 (211-306)||(43542928-43543022)
[»] chr7 (4 HSPs)
chr7 (220-306)||(42117479-42117564)
chr7 (223-303)||(37491295-37491374)
chr7 (227-306)||(27163201-27163279)
chr7 (241-303)||(28229027-28229089)
[»] chr1 (1 HSPs)
chr1 (223-303)||(38834633-38834712)
[»] chr5 (1 HSPs)
chr5 (232-306)||(2673883-2673956)
[»] scaffold0263 (1 HSPs)
scaffold0263 (227-303)||(19832-19907)
[»] chr8 (1 HSPs)
chr8 (170-202)||(41430481-41430513)
[»] chr3 (1 HSPs)
chr3 (211-283)||(52168429-52168500)


Alignment Details
Target: chr4 (Bit Score: 113; Significance: 4e-57; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 58 - 253
Target Start/End: Complemental strand, 44276102 - 44275898
Alignment:
Q  58 tattttctattttaatcacaattatgcatatgatttctgtttagaagaattctttaattttgaacccaacacaaatatatatactagnnnnnnnngtccg 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||        |||||    
T  44276102 tattttctattttaatcacaattatgcatatgatttctgtttagaagaattctttaattttgaacccaacgcaaatatatatactagttttttttgtccg 44276003  T
Q  158 gggctcgaactcatacattatgtttaccaattaagttaagttcacggaaactactatg---------atatgagaaaattcactttttagatttcattaa 248  Q
    |   |||||  ||||||||||||||||||||||||||||||||||||  |||||||||         ||| |||||||||||||||||||||||||||||    
T  44276002 gaattcgaatccatacattatgtttaccaattaagttaagttcacggggactactatgatctttattataagagaaaattcactttttagatttcattaa 44275903  T
Q  249 ataaa 253  Q
    |||||    
T  44275902 ataaa 44275898  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 245 - 306
Target Start/End: Complemental strand, 44275705 - 44275644
Alignment:
Q  245 ttaaataaatgatgcatttagtttatattaaagactatacacatcatttatttaatgaacct 306  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  44275705 ttaaataaatgatgcatttagtttatatcaaagactatacaaatcatttatttaatgaacct 44275644  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 227 - 306
Target Start/End: Original strand, 46462406 - 46462484
Alignment:
Q  227 ttcactttttagatttcattaaataaatgatgcatttagtttatattaaagactatacacatcatttatttaatgaacct 306  Q
    ||||||||||||||| |||||||||||||||| || | ||||||| ||||||||| | |||||||||||| |||||||||    
T  46462406 ttcactttttagatt-cattaaataaatgatgtatatggtttataataaagactacatacatcatttattcaatgaacct 46462484  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 325 - 360
Target Start/End: Complemental strand, 44275622 - 44275587
Alignment:
Q  325 agatagattaatttgtgagcatttattacatttgac 360  Q
    |||| |||||||||||||||||||||||||||||||    
T  44275622 agatggattaatttgtgagcatttattacatttgac 44275587  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 303
Target Start/End: Original strand, 21142138 - 21142191
Alignment:
Q  250 taaatgatgcatttagtttatattaaagactatacacatcatttatttaatgaa 303  Q
    ||||||||| |||||||||||| ||||||| ||| |||||||| ||| ||||||    
T  21142138 taaatgatgtatttagtttataataaagaccatatacatcattaattaaatgaa 21142191  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 303
Target Start/End: Complemental strand, 46462494 - 46462419
Alignment:
Q  227 ttcactttttagatttcattaaataaatgatgcatttagtttatattaaagactatacacatcatttatttaatgaa 303  Q
    |||||||||||| || |||| ||||||||||| || |||| | ||||| | || ||| |||||||||||||||||||    
T  46462494 ttcactttttaggtt-cattgaataaatgatgtatgtagtctttattataaaccatatacatcatttatttaatgaa 46462419  T

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Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 211 - 306
Target Start/End: Original strand, 43542928 - 43543022
Alignment:
Q  211 ctatgatatgagaaaattcactttttagatttcattaaataaatgatgcatttagtttatattaaagactatacacatcatttatttaatgaacct 306  Q
    |||| ||| |||||| ||||||||||||||| |||| |||||||||||||| |||||||||||||  || | | |||||||||||| |||||||||    
T  43542928 ctattataagagaaagttcactttttagatt-cattcaataaatgatgcatctagtttatattaagaacgagatacatcatttattgaatgaacct 43543022  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 306
Target Start/End: Original strand, 42117479 - 42117564
Alignment:
Q  220 gagaaaattcactttttagatttcattaaataaatgatgcatttagtttatattaaagactatacacatcatttatttaatgaacct 306  Q
    |||||| |||||||||||| || |||  ||||||||||| ||||||| |||||||  ||||| | |||||||||||| |||||||||    
T  42117479 gagaaagttcactttttaggtt-catccaataaatgatgtatttagtctatattagggactagatacatcatttattgaatgaacct 42117564  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 303
Target Start/End: Original strand, 37491295 - 37491374
Alignment:
Q  223 aaaattcactttttagatttcattaaataaatgatgcatttagtttatattaaagactatacacatcatttatttaatgaa 303  Q
    |||||| ||||||||||||| ||||||||||||||| || |||| ||||| |  ||| ||| |||||||||||| ||||||    
T  37491295 aaaatttactttttagattt-attaaataaatgatgtatgtagtctatataagtgaccatatacatcatttattaaatgaa 37491374  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 306
Target Start/End: Complemental strand, 27163279 - 27163201
Alignment:
Q  227 ttcactttttagatttcattaaataaatgatgcatttagtttatattaaagactatacacatcatttatttaatgaacct 306  Q
    ||||||||||||||| || ||||||||||||| || | ||||||| || |||| | | |||||||||||| |||||||||    
T  27163279 ttcactttttagatt-cactaaataaatgatgtatgtggtttataatatagaccacatacatcatttattcaatgaacct 27163201  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 303
Target Start/End: Original strand, 28229027 - 28229089
Alignment:
Q  241 ttcattaaataaatgatgcatttagtttatattaaagactatacacatcatttatttaatgaa 303  Q
    |||||| |||||||||||||| | ||| ||||||||||| | | |||||||||||| ||||||    
T  28229027 ttcatttaataaatgatgcatgtggttaatattaaagacgacatacatcatttattgaatgaa 28229089  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 303
Target Start/End: Original strand, 38834633 - 38834712
Alignment:
Q  223 aaaattcactttttagatttcattaaataaatgatgcatttagtttatattaaagactatacacatcatttatttaatgaa 303  Q
    |||||| | |||||||||| |||||||||||||||| || |||| ||||| || ||| ||| |||||||||||| ||||||    
T  38834633 aaaatttattttttagatt-cattaaataaatgatgtatatagtctatataaatgaccatatacatcatttattgaatgaa 38834712  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 306
Target Start/End: Complemental strand, 2673956 - 2673883
Alignment:
Q  232 tttttagatttcattaaataaatgatgcatttagtttatattaaagactatacacatcatttatttaatgaacct 306  Q
    ||||||||||| ||| |||||||||||||| |||| ||||||| |||| | | |||||||||||| |||| ||||    
T  2673956 tttttagattt-attcaataaatgatgcatgtagtctatattatagaccacatacatcatttattgaatgtacct 2673883  T

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Target: scaffold0263 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 303
Target Start/End: Complemental strand, 19907 - 19832
Alignment:
Q  227 ttcactttttagatttcattaaataaatgatgcatttagtttatattaaagactatacacatcatttatttaatgaa 303  Q
    ||||||||||||||| |||| ||||||| ||| || | ||| |||||| |||| | | |||||||||||||||||||    
T  19907 ttcactttttagatt-catttaataaattatgtatgtggttcatattatagaccacatacatcatttatttaatgaa 19832  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 41430481 - 41430513
Alignment:
Q  170 atacattatgtttaccaattaagttaagttcac 202  Q
    ||||||||| |||||||||||||||||||||||    
T  41430481 atacattatttttaccaattaagttaagttcac 41430513  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 283
Target Start/End: Complemental strand, 52168500 - 52168429
Alignment:
Q  211 ctatgatatgagaaaattcactttttagatttcattaaataaatgatgcatttagtttatattaaagactata 283  Q
    |||| ||| ||||||||| |||||| ||||| |||| ||||||||||| ||||| | ||||||| ||||||||    
T  52168500 ctattataagagaaaatttacttttaagatt-cattcaataaatgatgtatttaatatatattatagactata 52168429  T

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