View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5747-Insertion-6 (Length: 240)
Name: NF5747-Insertion-6
Description: NF5747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5747-Insertion-6 |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 30 - 189
Target Start/End: Complemental strand, 2632470 - 2632310
Alignment:
| Q |
30 |
acaaattttgtctgaaattgggtcattacagtgaccattgaatgcaggactctttacctcacgaccttcaatttgcaccacagcttcttctgcgttttca |
129 |
Q |
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| T |
2632470 |
acaaattttgtctgaaattgggtcattacagtgaccattgaatgtaggactctttacctcacaaccttcaatttgcaccacagcttcttctgcattttca |
2632371 |
T |
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| Q |
130 |
ataggaaacaaggtgtatgtttttaaaaagaagctatcaatt-aaaagtaaacataatatg |
189 |
Q |
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| T |
2632370 |
ataggaaacaaggtttatgtttttaaaaagaagctatcaattaaaaagtaaacataatatg |
2632310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 2630492 - 2630444
Alignment:
| Q |
74 |
caggactctttacctcacgaccttcaatttgcaccacagcttcttctgc |
122 |
Q |
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| T |
2630492 |
caggactctttttctcacaaccttcaatttgcaccacagcttcttctgc |
2630444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 240
Target Start/End: Complemental strand, 2632290 - 2632260
Alignment:
| Q |
210 |
ggtgtatatctcagaagaacttgaaaaaata |
240 |
Q |
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| T |
2632290 |
ggtgtatatctcagaagaacttgaaaaaata |
2632260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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