View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5747_high_3 (Length: 339)
Name: NF5747_high_3
Description: NF5747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5747_high_3 |
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| [»] scaffold1112 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 6330674 - 6330349
Alignment:
| Q |
1 |
aaacgaattcgtattaaacgttttatgggtcactatcacagttaacccaagttattattattaaagctctttttctatgctttttcttcaacaaagacag |
100 |
Q |
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| T |
6330674 |
aaacgaattcgtattaaacgttttatgggtcactatcacagttaacccaaattattattattaaagctctttttctattctttttcttcaacaaagacag |
6330575 |
T |
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| Q |
101 |
tccaatatgcaatacaaac-ttaagtcatataaaaataggtttaaggtgtcacattgtaaccaactttaatttctcattttccatgtcaacatatgataa |
199 |
Q |
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| T |
6330574 |
accaatatgcaatacaaaccttaagtcatataaaaataggtttaaggtgtcacattgtaaccaactttaatttctcattttccatgtcaacatatgataa |
6330475 |
T |
|
| Q |
200 |
aagatgacgcgtttgtgtgtgatttaatacgtttaaaacccttcaacaaaacaagtaaaatcgatatgcataggttgctttagaacaatttgtgtgtttg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6330474 |
aagatgacgcgtttgtgtgtgatttaatacgtttaaaacccttcaacaaaacaagtaaaatcgatatgcataggttgctttagaacaatttgactgtttg |
6330375 |
T |
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| Q |
300 |
ctaaataaagttctagtttttgtgat |
325 |
Q |
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||||| |||||||||||||||||||| |
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| T |
6330374 |
ctaaacaaagttctagtttttgtgat |
6330349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 6347152 - 6346975
Alignment:
| Q |
1 |
aaacgaattcgtattaaacgttttatgggtcactatcaca---gttaacccaagttattattattaaagctctttttctatgctttttcttcaacaaaga |
97 |
Q |
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| T |
6347152 |
aaacgaattcgtattaaacgttttatgggtcactatcacatgagttaacccaaattatg----tcaaagctctttttctatgctttttcttcaacaaaga |
6347057 |
T |
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| Q |
98 |
cagtccaatatgcaatacaaac-ttaagtcatataaaaataggtttaaggtgtcacattgtaaccaactttaatttctcatttt |
180 |
Q |
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| T |
6347056 |
cagtccaatgt--aatacaaaccttaagtcttgtataaataggtttaagctgtcacattgtaaccaactttaatttctcatttt |
6346975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 177 - 322
Target Start/End: Complemental strand, 6345879 - 6345732
Alignment:
| Q |
177 |
ttttccatgtcaacatatgataaaagat-gacgcgtttgtgtgtgatttaatacgtttaaaacccttcaacaaaacaagtaaaatcga-tatgcataggt |
274 |
Q |
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|||||||||||| |||||||||||||| |||||||||||||||| |||||||||||| ||||||||||| ||| |||||||||| | |||| ||| | |
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| T |
6345879 |
ttttccatgtcagcatatgataaaagacagacgcgtttgtgtgtggtttaatacgtttgaaacccttcaataaaccaagtaaaattgggtatgggtagct |
6345780 |
T |
|
| Q |
275 |
tgctttagaacaatttgtgtgtttgctaaataaagttctagtttttgt |
322 |
Q |
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| T |
6345779 |
tgctttagaacaatttgtttgtttgctaaatcaagttctagtttttgt |
6345732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 274 - 320
Target Start/End: Complemental strand, 6329092 - 6329046
Alignment:
| Q |
274 |
ttgctttagaacaatttgtgtgtttgctaaataaagttctagttttt |
320 |
Q |
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| T |
6329092 |
ttgctttagaacaatttgtgtgtttgctaaatgaagttctagttttt |
6329046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 6329131 - 6329095
Alignment:
| Q |
184 |
tgtcaacatatgataaaagatgacgcgtttgtgtgtg |
220 |
Q |
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| T |
6329131 |
tgtcaacatatgattaaagacgacgcgtttgtgtgtg |
6329095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1112 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: scaffold1112
Description:
Target: scaffold1112; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 176 - 325
Target Start/End: Original strand, 470 - 623
Alignment:
| Q |
176 |
attttccatgtcaacatat--gataaaagatgacgcgtttgtgt--gtgatttaatacgtttaaaacccttcaacaaaacaagtaaaatcgatatgcata |
271 |
Q |
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||||||||||||||||||| ||||||||| ||| |||||||| ||| |||||||| ||| |||||| |||| ||||||||||||||||||| | | |
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| T |
470 |
attttccatgtcaacatatatgataaaagacaacgagtttgtgtctgtggtttaatacctttgaaacccatcaataaaacaagtaaaatcgatacgtgga |
569 |
T |
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| Q |
272 |
ggttgctttagaacaatttgtgtgtttgctaaataaagttctagtttttgtgat |
325 |
Q |
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| T |
570 |
gcttgctttagaacaatttgtgtgtttgctaaataaagttctagtttttgtgat |
623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1112; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 128 - 161
Alignment:
| Q |
1 |
aaacgaattcgtattaaacgttttatgggtcact |
34 |
Q |
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| T |
128 |
aaacgaattcgtattaaacgttttatgggtcact |
161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 167
Target Start/End: Original strand, 2427247 - 2427281
Alignment:
| Q |
133 |
aaataggtttaaggtgtcacattgtaaccaacttt |
167 |
Q |
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| T |
2427247 |
aaataggcttaaggtgtcacattgtaaccaacttt |
2427281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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