View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5747_low_1 (Length: 525)
Name: NF5747_low_1
Description: NF5747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5747_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 1 - 510
Target Start/End: Original strand, 40520799 - 40521303
Alignment:
| Q |
1 |
agctggaagacataaaatcaagagaacaaatacatggtcaattatttcatcnnnnnnncctttctttctcatattgcttagtttaacaggaaaacatggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40520799 |
agctggaagacataaaatcaagagaacaaatacatggtcaattatttcatatttt-----tttctttctcatattgcttagtttaacaggaaaacatggt |
40520893 |
T |
|
| Q |
101 |
tatggaaaaatatacggttgcaaaacccgagcaaaaagaagtgacttaccaagaatccaagaatccgctgatagggggagctggacctagcaacggtgtg |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40520894 |
tatggaaaaatatacggttgcaaaactcgagcaaaaagaagtgacttaccaagaatccaagaatccgctgatagggggagctggacctagcaacggtgtg |
40520993 |
T |
|
| Q |
201 |
ctcaaaggaggaggaggtggtggatccattacctacttacaagttacaacggctgcttcttcagttctaccattcaataaatatgtaaatgttgaataac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40520994 |
ctcaaaggaggaggaggtggtggatccattacctacttacaagttacaacggctgcttcttcagttctaccattcaataaatatgtaaatgttgaataac |
40521093 |
T |
|
| Q |
301 |
ttgctttcaacaagtcaaacctttcatctaccattcaaaggctgataattcattcaatggcaaaaattcaaccccaactaacatataaaccttgttaatc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40521094 |
ttgctttcaacaagtcaaacctttcatctaccattcaaaggctgataattcattcaatggcaaaaattcaaccccaactaacatataaaccttgttaatc |
40521193 |
T |
|
| Q |
401 |
aaataataaaaagttactcactaataaacattcattttcttaggatagagaatgcaatagatatacaatatacaattctatgtgtgatatatctatttgt |
500 |
Q |
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||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40521194 |
aaacaataaaaagttactcactaataaaaattcattttcttaggatagagaatgcaatagatatacaatatacaattctatgtgtgatatatctatttgt |
40521293 |
T |
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| Q |
501 |
acatatattt |
510 |
Q |
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| T |
40521294 |
acatatattt |
40521303 |
T |
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