View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5747_low_4 (Length: 337)
Name: NF5747_low_4
Description: NF5747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5747_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 270
Target Start/End: Original strand, 23339332 - 23339592
Alignment:
| Q |
12 |
catgagcagtagaatcgtctaatctactgtaagagtatgttttgtgtaatgattagtaatatcctaatatgagttaatgtgtttaataaaattaagatag |
111 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23339332 |
catgagtagtaggatcgtctaatctactgtaagagtatgttttgagttatgattagtaatatcctaatatgagttaatgtgtttaataaaattaagatag |
23339431 |
T |
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| Q |
112 |
aaaaagatattctaaatattaatattttatgatttatttcatttcattatcattgtct--tatagtaacaagacacaactgcatggtctttgaaattaga |
209 |
Q |
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| T |
23339432 |
aaaaagatattctaaatattaatattttatgatttatttcatttcattatcattgtcttatatagtaacaagccacaactgcatggtctttgaaattaga |
23339531 |
T |
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| Q |
210 |
gaagnnnnnnnctaattcaagtattggatgccaagacaataattaaattacatatcgtaga |
270 |
Q |
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| T |
23339532 |
gaagaaaaaaaataattcaagtattgggtgccaacacaaaaattaaattacatatcgtaga |
23339592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 45 - 270
Target Start/End: Complemental strand, 23360308 - 23360079
Alignment:
| Q |
45 |
agtatgttttgtgtaatgattagtaatatcctaatatgagttaatgtgtttaataaaattaagatagaaaaagatattctaaatattaatattttatgat |
144 |
Q |
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| T |
23360308 |
agtatgttttgagttatgattagaaatatcctaatatgagttagcgtgttcaataaaattaagatagaaaatgatattctaaataataatattttatgat |
23360209 |
T |
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| Q |
145 |
ttatttcatttcattatcattgtcttatagtaacaagacacaactgcatggtctttgaaattagagaag----nnnnnnnctaattcaagtattggatgc |
240 |
Q |
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| T |
23360208 |
ttatttcatttcattatcatcgtcttatagtaccaagccataactgcatggtctttgaaattagagaagaagagaaaaaaacaattcaagtattgggtgc |
23360109 |
T |
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| Q |
241 |
caagacaataattaaattacatatcgtaga |
270 |
Q |
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| T |
23360108 |
caacacaataattaaattacatatcataga |
23360079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 175
Target Start/End: Original strand, 23591537 - 23591612
Alignment:
| Q |
99 |
aaaattaagatagaaaaagatattctaaatattaatattttatgatttatttcatttcattatcattgtcttatagt |
175 |
Q |
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|||||||||| |||||| |||| |||||| | |||||||| ||| |||||||||||| ||||||||| | ||||||| |
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| T |
23591537 |
aaaattaagagagaaaatgataatctaaacaataatattt-atgctttatttcatttaattatcattatgttatagt |
23591612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 39 - 209
Target Start/End: Complemental strand, 33178651 - 33178475
Alignment:
| Q |
39 |
tgtaagagtatgttttgtgtaatgattagtaatatcctaatatgagttaatgtgtttaataaaattaagatagaaaaa--gatattctaaa----tatta |
132 |
Q |
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|||||||||| |||| || ||||||| |||||||||||||||||||| ||||||||||||||||||||||||| || |||| |||||| || || |
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| T |
33178651 |
tgtaagagtaatatttgagttatgattaataatatcctaatatgagttagtgtgtttaataaaattaagatagaataaatgataatctaaaatagtacta |
33178552 |
T |
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| Q |
133 |
atattttatgatttatttcatttcattatcattgtcttatagtaacaagacacaactgcatggtctttgaaattaga |
209 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| |||| || |||||| ||||||||||||||||| |
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| T |
33178551 |
atattttatgatttatttcatttgattatcattgtcttatagtaccaagtcataactgcgtggtctttgaaattaga |
33178475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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