View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5747_low_5 (Length: 276)
Name: NF5747_low_5
Description: NF5747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5747_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 27 - 271
Target Start/End: Original strand, 25226656 - 25226900
Alignment:
| Q |
27 |
taactcggtgattgtgtctcctaagttcaatggctccaactatcttgcatggagcagatcaatgcagcgtgctttgggagctaagaacaagcttcccttc |
126 |
Q |
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| T |
25226656 |
taactcggtgattgtgtctcctatgttcaacggctccaactatcttacatggagcggatcaatgtagcgtgctttgggagctaaaaacaagcttcccttc |
25226755 |
T |
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| Q |
127 |
atcagtggaagcttacctgtgcctgatgaagatgatctcaaccgtcttgcttgggaacgctgcaaccatttggtacattcttggatttacaattctgtta |
226 |
Q |
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|||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||| ||||||||||| |
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| T |
25226756 |
atcaatggaaacttacatgtgcctgatgaagatgatctcaaccgtcatgcttgggaacgctgtaaccatttggtacactcttggattatcaattctgtta |
25226855 |
T |
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| Q |
227 |
ctgattcaattgctcagactatagtgtttcatgattatgcctttg |
271 |
Q |
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| T |
25226856 |
ctgatttaattgctcagactatagtatttcatgattacgcctttg |
25226900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 31 - 271
Target Start/End: Complemental strand, 30757981 - 30757741
Alignment:
| Q |
31 |
tcggtgattgtgtctcctaagttcaatggctccaactatcttgcatggagcagatcaatgcagcgtgctttgggagctaagaacaagcttcccttcatca |
130 |
Q |
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| T |
30757981 |
tcggtgattgtgtctcctaagttcaatggatccaattatcttgcatggagtagatcaatgcagcgtgctttgggtgttaagaacaagcttccctttatca |
30757882 |
T |
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| Q |
131 |
gtggaagcttacctgtgcctgatgaagatgatctcaaccgtcttgcttgggaacgctgcaaccatttggtacattcttggatttacaattctgttactga |
230 |
Q |
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| T |
30757881 |
atggaactctacctgtacctgatcatgatgacctcaatcgtaatgcttcggaaagatgcaatcatttggtatagtcttggattattaattctgtttctga |
30757782 |
T |
|
| Q |
231 |
ttcaattgctcagactatagtgtttcatgattatgcctttg |
271 |
Q |
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||||||| |||| |||||| ||||||||||| |||| |||| |
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| T |
30757781 |
ttcaatttctcaaactatattgtttcatgataatgcttttg |
30757741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 31 - 271
Target Start/End: Complemental strand, 30765433 - 30765193
Alignment:
| Q |
31 |
tcggtgattgtgtctcctaagttcaatggctccaactatcttgcatggagcagatcaatgcagcgtgctttgggagctaagaacaagcttcccttcatca |
130 |
Q |
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||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||| |||| |
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| T |
30765433 |
tcggtgattgtgtctcctaagttcaatggatccaattatcttgcatggagtagatcaatgcagcgtgctttgggtgttaagaacaagcttccctttatca |
30765334 |
T |
|
| Q |
131 |
gtggaagcttacctgtgcctgatgaagatgatctcaaccgtcttgcttgggaacgctgcaaccatttggtacattcttggatttacaattctgttactga |
230 |
Q |
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| T |
30765333 |
atggaactctacctgtacctgatcatgatgacctcaatcgtaatgcttcggaaagatgcaatcatttggtatagtcttggattattaattctgtttctga |
30765234 |
T |
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| Q |
231 |
ttcaattgctcagactatagtgtttcatgattatgcctttg |
271 |
Q |
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||||||| |||| |||||| ||||||||||| |||| |||| |
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| T |
30765233 |
ttcaatttctcaaactatattgtttcatgataatgcttttg |
30765193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 248
Target Start/End: Original strand, 52776097 - 52776170
Alignment:
| Q |
175 |
gcttgggaacgctgcaaccatttggtacattcttggatttacaattctgttactgattcaattgctcagactat |
248 |
Q |
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| T |
52776097 |
gcttgggaacgatgcaaccatttggtacaatcttggctcattaattcagtttctgattcaattgctcaaactat |
52776170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 248
Target Start/End: Complemental strand, 19588574 - 19588501
Alignment:
| Q |
175 |
gcttgggaacgctgcaaccatttggtacattcttggatttacaattctgttactgattcaattgctcagactat |
248 |
Q |
| |
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||||||||||| ||||||||||||||||| |||||| || ||||| ||| |||||||||||||||| ||||| |
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| T |
19588574 |
gcttgggaacgatgcaaccatttggtacaatcttggcttattaattccgtttctgattcaattgctcaaactat |
19588501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 248
Target Start/End: Original strand, 12283717 - 12283790
Alignment:
| Q |
175 |
gcttgggaacgctgcaaccatttggtacattcttggatttacaattctgttactgattcaattgctcagactat |
248 |
Q |
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| T |
12283717 |
gcttgggaacgatgcaaccatttggtacaatcttggctcattaattcagtttttgattcaattgctcaaactat |
12283790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 15447045 - 15447113
Alignment:
| Q |
67 |
tatcttgcatggagcagatcaatgcagcgtgctttgggagctaagaacaagcttcccttcatcagtgga |
135 |
Q |
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| T |
15447045 |
tatcttgcatggagcagatcaatgcaacgtgctctaggtgctaagaaaaatcttcctttcatcaatgga |
15447113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 135
Target Start/End: Complemental strand, 34893471 - 34893409
Alignment:
| Q |
73 |
gcatggagcagatcaatgcagcgtgctttgggagctaagaacaagcttcccttcatcagtgga |
135 |
Q |
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| T |
34893471 |
gcatggagcaggtcaatgcaacgcgctttaggcgccaagaacaagcttcctttcatcaatgga |
34893409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 20701043 - 20700999
Alignment:
| Q |
217 |
aattctgttactgattcaattgctcagactatagtgtttcatgat |
261 |
Q |
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||||| ||| || |||||||||||||||||||||| ||||||||| |
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| T |
20701043 |
aattcagtttcttattcaattgctcagactatagtttttcatgat |
20700999 |
T |
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