View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5747_low_7 (Length: 254)

Name: NF5747_low_7
Description: NF5747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5747_low_7
NF5747_low_7
[»] chr4 (1 HSPs)
chr4 (3-238)||(4117539-4117789)
[»] chr5 (2 HSPs)
chr5 (3-237)||(21156844-21157093)
chr5 (24-133)||(39481085-39481205)
[»] scaffold0317 (1 HSPs)
scaffold0317 (8-134)||(19233-19358)
[»] chr6 (4 HSPs)
chr6 (151-237)||(6301771-6301857)
chr6 (151-237)||(6308581-6308667)
chr6 (84-142)||(6301694-6301752)
chr6 (84-142)||(6308504-6308562)
[»] chr1 (1 HSPs)
chr1 (6-70)||(47933927-47933991)
[»] chr7 (2 HSPs)
chr7 (151-237)||(2440657-2440743)
chr7 (67-142)||(2440760-2440837)
[»] chr8 (2 HSPs)
chr8 (6-65)||(30849775-30849834)
chr8 (179-238)||(30849850-30849909)
[»] chr2 (1 HSPs)
chr2 (95-142)||(23986193-23986240)


Alignment Details
Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 3 - 238
Target Start/End: Original strand, 4117539 - 4117789
Alignment:
Q  3 tcgctctcagatctgaacgccattaacgtcatctatcaccatatcatctcaccgtcaccaccacc------------gtcctcaccctctc--gcctccg 88  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||  ||||| |    
T  4117539 tcgctctcaaatctgaacgccattaacgtcatctatcaccatatcatctcaccgtcaccaccaccacctttgccaccgtcctcaccctctctcgcctctg 4117638  T
Q  89 tatttgttctctctgcctcacactcttcaccaaaacaaaacatcaacaacctttnnnnnnnn-caaaacagcagtaatttcacagatgtcggaatgatgc 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||| |||||||||    
T  4117639 tatttgttctctctgcctcacactcttcaccaaaacaaaacatcaacaaccttttaagaaaaacaaaacagcagtaatttcacagatgtcagaatgatgc 4117738  T
Q  188 gacggcggaaacagagaaggcagcaacggagagaaggcggagagaagaaag 238  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4117739 tacggcggaaacagagaaggcagcaacggagagaaggcggagagaagaaag 4117789  T

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Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 3 - 237
Target Start/End: Original strand, 21156844 - 21157093
Alignment:
Q  3 tcgctctcagatctgaacgccattaacgtcatctatcaccatatcatctcaccgtcaccaccacc------------gtcctcaccctctc--gcctccg 88  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||  ||||| |    
T  21156844 tcgcactcagatctgaacgccattaacgtcatctatcaccatatcatctcaccgtcaccaccaccaccgttgccaccgtcctcaccctctctcgcctctg 21156943  T
Q  89 tatttgttctctctgcctcacactcttcaccaaaacaaaacatcaacaacctttnnnnnnnn-caaaacagcagtaatttcacagatgtcggaatgatgc 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||    
T  21156944 tatttgttctctctgcctcacactcttcaccaaaacaaaacatcaacaaccttttaaaaaaaacaaaacagcagtaatttcacagatgtcggaatgatgc 21157043  T
Q  188 gacggcggaaacagagaaggcagcaacggagagaaggcggagagaagaaa 237  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  21157044 gacggcggaaacagagaaggcagaaacagagagaaggcggagagaagaaa 21157093  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 133
Target Start/End: Complemental strand, 39481205 - 39481085
Alignment:
Q  24 attaacgtcatctatcaccatatcatctcaccgtcaccacca---------ccgtcctcacc--ctctcgcctccgtatttgttctctctgcctcacact 112  Q
    ||||||||||||||||||||| ||||||||||||||||||||         |||||| ||||  ||||||| | | ||||||||||||||||||||| ||    
T  39481205 attaacgtcatctatcaccatctcatctcaccgtcaccaccaccgccaccgccgtccgcaccctctctcgcattcatatttgttctctctgcctcactct 39481106  T
Q  113 cttcaccaaaacaaaacatca 133  Q
    |||| |||||||  |||||||    
T  39481105 cttctccaaaacccaacatca 39481085  T

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Target: scaffold0317 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 134
Target Start/End: Original strand, 19233 - 19358
Alignment:
Q  8 ctcagatctgaacgccattaacgtcatctatcaccatatcatctcaccgtcaccaccaccgtcctcaccctc--tcgcctccgtatttgttctctctgcc 105  Q
    |||| |||||||| ||||||||||||||||||||||| ||||||||||||   |||| |||| |||||||||  |||| | | |||||||||| || |||    
T  19233 ctcaaatctgaacaccattaacgtcatctatcaccatctcatctcaccgt---caccgccgtgctcaccctctttcgcattcatatttgttctgtcagcc 19329  T
Q  106 tcacactcttcaccaaaacaaaacatcaa 134  Q
    |||| ||| || |||||||| ||||||||    
T  19330 tcactctcctctccaaaacacaacatcaa 19358  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 151 - 237
Target Start/End: Original strand, 6301771 - 6301857
Alignment:
Q  151 caaaacagcagtaatttcacagatgtcggaatgatgcgacggcggaaacagagaaggcagcaacggagagaaggcggagagaagaaa 237  Q
    |||||||||| || ||||||| ||||||||||||  |||||||| ||||||||||||| || | ||||||||||| |||||||||||    
T  6301771 caaaacagcaatattttcacatatgtcggaatgaatcgacggcgaaaacagagaaggcggcgagggagagaaggcagagagaagaaa 6301857  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 151 - 237
Target Start/End: Original strand, 6308581 - 6308667
Alignment:
Q  151 caaaacagcagtaatttcacagatgtcggaatgatgcgacggcggaaacagagaaggcagcaacggagagaaggcggagagaagaaa 237  Q
    |||||||||| || ||||||| ||||||||||||  |||||||| ||||||||||||| || | ||||||||||| |||||||||||    
T  6308581 caaaacagcaatattttcacatatgtcggaatgaatcgacggcgaaaacagagaaggcggcgagggagagaaggcagagagaagaaa 6308667  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 142
Target Start/End: Original strand, 6301694 - 6301752
Alignment:
Q  84 ctccgtatttgttctctctgcctcacactcttcaccaaaacaaaacatcaacaaccttt 142  Q
    |||| |||||||| ||| ||||||||||||||| |||||| | |||| |||||||||||    
T  6301694 ctccatatttgttttctttgcctcacactcttctccaaaaaacaacaacaacaaccttt 6301752  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 142
Target Start/End: Original strand, 6308504 - 6308562
Alignment:
Q  84 ctccgtatttgttctctctgcctcacactcttcaccaaaacaaaacatcaacaaccttt 142  Q
    |||| |||||||| ||| ||||||||||||||| |||||| | |||| |||||||||||    
T  6308504 ctccatatttgttttctttgcctcacactcttctccaaaaaacaacaacaacaaccttt 6308562  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 47933991 - 47933927
Alignment:
Q  6 ctctcagatctgaacgccattaacgtcatctatcaccatatcatctcaccgtcaccaccaccgtc 70  Q
    ||||||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||| ||||    
T  47933991 ctctcagatctgaacaccattaacgtcgtctattaccatctcatctcaccgtcaccaccatcgtc 47933927  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 237
Target Start/End: Complemental strand, 2440743 - 2440657
Alignment:
Q  151 caaaacagcagtaatttcacagatgtcggaatgatgcgacggcggaaacagagaaggcagcaacggagagaaggcggagagaagaaa 237  Q
    ||||| |||| || ||||||| ||||||||||||  |||||||| ||||||||||||| || | ||||||||||| |||||||||||    
T  2440743 caaaagagcaatattttcacatatgtcggaatgactcgacggcgaaaacagagaaggcggcgagggagagaaggcagagagaagaaa 2440657  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 142
Target Start/End: Complemental strand, 2440837 - 2440760
Alignment:
Q  67 cgtcctcaccctc--tcgcctccgtatttgttctctctgcctcacactcttcaccaaaacaaaacatcaacaaccttt 142  Q
    |||||||||||||  || ||||| || ||||| ||| ||||||||||||||| |||||| | |||| |||||||||||    
T  2440837 cgtcctcaccctccctcacctccatacttgttttctttgcctcacactcttctccaaaaaacaacaacaacaaccttt 2440760  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 30849775 - 30849834
Alignment:
Q  6 ctctcagatctgaacgccattaacgtcatctatcaccatatcatctcaccgtcaccacca 65  Q
    |||||||||| |||| |||||||| |||||||| ||||| ||||||||||||||||||||    
T  30849775 ctctcagatcagaacaccattaacatcatctattaccatctcatctcaccgtcaccacca 30849834  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 30849850 - 30849909
Alignment:
Q  179 gaatgatgcgacggcggaaacagagaaggcagcaacggagagaaggcggagagaagaaag 238  Q
    |||||| |||||| |  ||||||||||||| || | ||||||||||||||||||||||||    
T  30849850 gaatgacgcgacgacaaaaacagagaaggcggcgagggagagaaggcggagagaagaaag 30849909  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 142
Target Start/End: Complemental strand, 23986240 - 23986193
Alignment:
Q  95 ttctctctgcctcacactcttcaccaaaacaaaacatcaacaaccttt 142  Q
    |||||||| ||||||||||||| |||||||| ||||||||||||||||    
T  23986240 ttctctctacctcacactcttctccaaaacacaacatcaacaaccttt 23986193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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