View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5747_low_9 (Length: 249)

Name: NF5747_low_9
Description: NF5747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5747_low_9
NF5747_low_9
[»] chr5 (10 HSPs)
chr5 (15-249)||(10563551-10563785)
chr5 (29-249)||(10610234-10610454)
chr5 (37-233)||(10748488-10748684)
chr5 (50-249)||(10764618-10764817)
chr5 (40-249)||(7191529-7191738)
chr5 (40-249)||(10653675-10653887)
chr5 (22-249)||(10742157-10742387)
chr5 (137-245)||(10661658-10661766)
chr5 (48-124)||(10218230-10218306)
chr5 (44-165)||(10603361-10603482)
[»] chr6 (5 HSPs)
chr6 (15-249)||(12905711-12905948)
chr6 (15-249)||(12930800-12931037)
chr6 (25-249)||(12947165-12947392)
chr6 (22-249)||(12898089-12898320)
chr6 (15-249)||(12956602-12956839)
[»] chr2 (1 HSPs)
chr2 (15-249)||(17924854-17925091)


Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 249
Target Start/End: Complemental strand, 10563785 - 10563551
Alignment:
Q  15 tattagaagctatcgaaagcatttctagtttactacaatttgtcaaatagtttaaaaactctaaatctataattgaattgttacctaaattgttgtatcc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10563785 tattagaagctatcgaaagcatttctagtttactacaatttgtcaaatagtttaaaaactctaaatctataattgaattgttacctaaattgttgtatcc 10563686  T
Q  115 aaaacttagccagtaaatatcttgtaacttctctagacttggaacttgtcccaccaaatagttttgagctaagtcgagtacttgtagggaagaagcattt 214  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10563685 aaaacttagccagtaaagatcttgtaacttctctagacttggaacttgtcccaccaaatagttttgagctaagtcgagtacttgtagggaagaagcattt 10563586  T
Q  215 acaatggaaatagggattggacctgagaattgatt 249  Q
    |||||||||||||||||||||||||||||||||||    
T  10563585 acaatggaaatagggattggacctgagaattgatt 10563551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 29 - 249
Target Start/End: Complemental strand, 10610454 - 10610234
Alignment:
Q  29 gaaagcatttctagtttactacaatttgtcaaatagtttaaaaactctaaatctataattgaattgttacctaaattgttgtatccaaaacttagccagt 128  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||| |||| ||||||| | ||||| |||||||    
T  10610454 gaaagcttttctagtttactacagtttgtcaaatattttaaaaactctaaatctatagttgaattgttaccgaaatagttgtattccaaactcagccagt 10610355  T
Q  129 aaatatcttgtaacttctctagacttggaacttgtcccaccaaatagttttgagctaagtcgagtacttgtagggaagaagcatttacaatggaaatagg 228  Q
    ||| |||| |||||||||||||||||||||||||||| ||||||| ||||||| |||| || | || ||||||||||||||||||| ||||||||| |||    
T  10610354 aaagatctggtaacttctctagacttggaacttgtccaaccaaattgttttgacctaaatcaattatttgtagggaagaagcatttgcaatggaaacagg 10610255  T
Q  229 gattggacctgagaattgatt 249  Q
    |||||||||||||||||||||    
T  10610254 gattggacctgagaattgatt 10610234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 37 - 233
Target Start/End: Original strand, 10748488 - 10748684
Alignment:
Q  37 ttctagtttactacaatttgtcaaatagtttaaaaactctaaatctataattgaattgttacctaaattgttgtatccaaaacttagccagtaaatatct 136  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||| |||| ||||| | | ||| |||||||||||| ||||    
T  10748488 ttctagtttactacaatttgtcaaatactttaaaaactctaaatcgatagttgaattgttaccgaaatagttgtcttccaaatttagccagtaaagatct 10748587  T
Q  137 tgtaacttctctagacttggaacttgtcccaccaaatagttttgagctaagtcgagtacttgtagggaagaagcatttacaatggaaatagggattg 233  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||    
T  10748588 tgtaacttctctagacttggaacttgccccaccaaatagttttgagctaagtcaagtaattgtagggaagaagcatttacaatggaaataggcattg 10748684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 50 - 249
Target Start/End: Original strand, 10764618 - 10764817
Alignment:
Q  50 caatttgtcaaatagtttaaaaactctaaatctataattgaattgttacctaaattgttgtatccaaaacttagccagtaaatatcttgtaacttctcta 149  Q
    |||||||||||||| ||||||||||||||||| ||  | ||||||| |||||||||||| | | | ||| ||||| ||  || || |||||| ||| |||    
T  10764618 caatttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaagccaagatgttgtaaattcccta 10764717  T
Q  150 gacttggaacttgtcccaccaaatagttttgagctaagtcgagtacttgtagggaagaagcatttacaatggaaatagggattggacctgagaattgatt 249  Q
    |||||||||||||||| ||||| | ||||    ||| ||| |||| ||||| |  |||||||||| |||| |||| |||||||| |||||||||||||||    
T  10764718 gacttggaacttgtccaaccaatttgtttgttcctatgtctagtaattgtatgacagaagcatttgcaatcgaaacagggattgtacctgagaattgatt 10764817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 40 - 249
Target Start/End: Complemental strand, 7191738 - 7191529
Alignment:
Q  40 tagtttactacaatttgtcaaatagtttaaaaactctaaatctataattgaattgttacctaaattgttgtatc-caaaacttagccagtaaatatcttg 138  Q
    |||||||||||| ||||||||  | |||||||||||||||||  || | ||||||||||||||| |||| || | | | | ||| ||    || ||| ||    
T  7191738 tagtttactacagtttgtcaaggattttaaaaactctaaatccttagtggaattgttacctaaactgtt-tagctctagatttaaccgtcgaagatcatg 7191640  T
Q  139 taacttctctagacttggaacttgtcccaccaaatagttttgagctaagtcgagtacttgtagggaagaagcatttacaatggaaatagggattggacct 238  Q
    ||||||| ||||||||||||||||||| ||||||| ||||||| ||||||| ||      ||||||||||||||||  ||||||||||||||||| ||||    
T  7191639 taacttccctagacttggaacttgtccgaccaaattgttttgatctaagtcaagattaaatagggaagaagcatttgaaatggaaatagggattgtacct 7191540  T
Q  239 gagaattgatt 249  Q
    |||||||||||    
T  7191539 gagaattgatt 7191529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 40 - 249
Target Start/End: Original strand, 10653675 - 10653887
Alignment:
Q  40 tagtttactacaatttgtcaaatagtttaaaaactctaaatctataattgaattgttacctaaattgttgtatccaaaacttagccagtaaatatcttgt 139  Q
    |||||||||||| ||||||||    |||||||| ||||||||  || ||| |||||  |||||||||||  || | | | ||||||  | || ||| |||    
T  10653675 tagtttactacagtttgtcaaggtttttaaaaattctaaatccttagttgtattgtctcctaaattgttaaattctagatttagccgttgaagatcatgt 10653774  T
Q  140 aacttctctagacttggaacttgtcccaccaaatagttttgagc---taagtcgagtacttgtagggaagaagcatttacaatggaaatagggattggac 236  Q
    || ||| | ||||||||||||||||| | |||||  |||||| |   |||||||||| ||| |||||||||||||||| |||||||||||||||||| ||    
T  10653775 aaattccccagacttggaacttgtccgagcaaattattttgatcagataagtcgagttcttttagggaagaagcatttgcaatggaaatagggattgtac 10653874  T
Q  237 ctgagaattgatt 249  Q
    |||||||||||||    
T  10653875 ctgagaattgatt 10653887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 22 - 249
Target Start/End: Original strand, 10742157 - 10742387
Alignment:
Q  22 agctatcgaaagcatttctagtttactacaatttgtcaaatagtttaaaaactctaaatctataattgaattgttacctaaattgttgtatccaaaactt 121  Q
    ||||||||||| || || || |||| ||||||||||||||||  ||||||||  |||||||||   |||||||||||||||||||||  |    ||| ||    
T  10742157 agctatcgaaaacaattttaatttagtacaatttgtcaaatatcttaaaaacattaaatctatggctgaattgttacctaaattgttagactgcaaattt 10742256  T
Q  122 agccagtaaatatcttgtaacttctctagacttggaacttgtcccaccaaatagttttg---agctaagtcgagtacttgtagggaagaagcatttacaa 218  Q
    |  |  | || ||| ||||||||| | ||| ||||||||||||| ||||||| ||||||   | |||| || |||  ||||| || |||||||||| |||    
T  10742257 aatctttgaagatcctgtaacttcccaagatttggaacttgtccaaccaaattgttttgatcacctaaatcaagtgattgtaaggcagaagcatttgcaa 10742356  T
Q  219 tggaaatagggattggacctgagaattgatt 249  Q
    ||||||||||||||||||||| |||||||||    
T  10742357 tggaaatagggattggacctgtgaattgatt 10742387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 245
Target Start/End: Original strand, 10661658 - 10661766
Alignment:
Q  137 tgtaacttctctagacttggaacttgtcccaccaaatagttttgagctaagtcgagtacttgtagggaagaagcatttacaatggaaatagggattggac 236  Q
    |||| |||| ||||||||||||||||||| || |||| |||| ||  ||||||||||  | | ||||||||||||||| |||||||||||||||||| ||    
T  10661658 tgtagcttccctagacttggaacttgtccgacaaaattgtttcgacttaagtcgagttgtagaagggaagaagcatttgcaatggaaatagggattgtac 10661757  T
Q  237 ctgagaatt 245  Q
    |||| ||||    
T  10661758 ctgaaaatt 10661766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 124
Target Start/End: Original strand, 10218230 - 10218306
Alignment:
Q  48 tacaatttgtcaaatagtttaaaaactctaaatctataattgaattgttacctaaattgttgtatccaaaacttagc 124  Q
    |||||||||||||| | ||||||||||| |||||  |  ||||||||| |||||||| ||||||| | |||||||||    
T  10218230 tacaatttgtcaaagattttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattccaaacttagc 10218306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 165
Target Start/End: Complemental strand, 10603482 - 10603361
Alignment:
Q  44 ttactacaatttgtcaaatagtttaaaaactctaaatctataattgaattgttacctaaattgttgtatccaaaacttagccagtaaatatcttgtaact 143  Q
    |||||||| ||||||||  | ||||||||||| ||||| ||  |||| |||| ||||||| ||||   | | ||| ||||| | |||| ||||| || ||    
T  10603482 ttactacagtttgtcaatgattttaaaaactccaaatcaattgttgagttgtcacctaaaatgttcatttccaaatttagcaaataaagatcttttagct 10603383  T
Q  144 tctctagacttggaacttgtcc 165  Q
    || |||||||||||||||||||    
T  10603382 tccctagacttggaacttgtcc 10603361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 15 - 249
Target Start/End: Complemental strand, 12905948 - 12905711
Alignment:
Q  15 tattagaagctatcgaaagcatttctagtttactacaatttgtcaaatagtttaaaaactctaaatctataattgaattgttacctaaattgttgtatcc 114  Q
    |||||||| |||| |||||||  | ||||||||| |||||||||||||| |||||||||||||||||  || ||||| ||||||||||||||||| ||||    
T  12905948 tattagaatctattgaaagcacgtatagtttactgcaatttgtcaaatattttaaaaactctaaatccttagttgaaatgttacctaaattgttgaatcc 12905849  T
Q  115 aaaacttagccagtaaatatcttgtaacttctctagacttggaacttgtcccaccaaat---agttttgagctaagtcgagtacttgtagggaagaagca 211  Q
     ||||||||   | ||| || |||||| ||| ||||||||||||||||||| |||||||    |||||  | |||||| | || |||||||| |||||||    
T  12905848 caaacttagaatggaaagattttgtaaattccctagacttggaacttgtccaaccaaattcatgttttttgataagtctaatatttgtagggcagaagca 12905749  T
Q  212 tttacaatggaaatagggattggacctgagaattgatt 249  Q
    ||  |||| ||||||||||||||||| |||||||||||    
T  12905748 ttatcaatcgaaatagggattggaccagagaattgatt 12905711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 15 - 249
Target Start/End: Complemental strand, 12931037 - 12930800
Alignment:
Q  15 tattagaagctatcgaaagcatttctagtttactacaatttgtcaaatagtttaaaaactctaaatctataattgaattgttacctaaattgttgtatcc 114  Q
    ||||| ||| |||||||||||  | ||||||||| |||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||   | |    
T  12931037 tattataagatatcgaaagcacgtatagtttactgcaatttgtcaaatattttaaaaactctaaatccatagttgaattgttacctaaattgttaacttc 12930938  T
Q  115 aaaacttagccagtaaatatcttgtaacttctctagacttggaacttgtcccaccaaat---agttttgagctaagtcgagtacttgtagggaagaagca 211  Q
     ||||||||  || ||| ||||||||| |||   ||||||||||||||||| |||||||    ||| |   ||||||| | || |||||||| |||||||    
T  12930937 caaacttaggaaggaaagatcttgtaaattcctaagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatatttgtagggcagaagca 12930838  T
Q  212 tttacaatggaaatagggattggacctgagaattgatt 249  Q
    ||| |||| ||| |||||||||||||||||||||||||    
T  12930837 tttgcaatcgaagtagggattggacctgagaattgatt 12930800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 25 - 249
Target Start/End: Complemental strand, 12947392 - 12947165
Alignment:
Q  25 tatcgaaagcatttctagtttactacaatttgtcaaatagtttaaaaactctaaatctataattgaattgttacctaaattgttgtatccaaaacttagc 124  Q
    |||||||||||| | ||||||||| |||||||||||||| |||||||||||||| || ||| ||||| ||||||||||||||||  || | ||||||||     
T  12947392 tatcgaaagcatgtttagtttactgcaatttgtcaaatattttaaaaactctaagtccatagttgaaatgttacctaaattgttaaattccaaacttagg 12947293  T
Q  125 cagtaaatatcttgtaacttctctagacttggaacttgtcccaccaaat---agttttgagctaagtcgagtacttgtagggaagaagcatttacaatgg 221  Q
     || ||| ||||||||| |||   ||||||||||||||||| |||||||    ||| ||  ||||||| | |  |||||||| |||||||||| |||| |    
T  12947292 aaggaaagatcttgtaaattcctaagacttggaacttgtccaaccaaattcatgttgtgtcctaagtctaatctttgtagggcagaagcatttgcaattg 12947193  T
Q  222 aaatagggattggacctgagaattgatt 249  Q
    ||||||| ||||||||||||||||||||    
T  12947192 aaataggaattggacctgagaattgatt 12947165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 249
Target Start/End: Complemental strand, 12898320 - 12898089
Alignment:
Q  22 agctatcgaaagcatttctagtttactacaatttgtcaaatagtttaaaaactct-aaatctataattgaattgttacctaaattgttgtatccaaaact 120  Q
    ||||||||||||||  | ||||||||| |||||||||||||| |||||||| ||| ||||| ||| ||||| ||||||||||||||||| |||| |||||    
T  12898320 agctatcgaaagcacatttagtttactgcaatttgtcaaatattttaaaaaatctaaaatccatagttgaaatgttacctaaattgttgaatcccaaact 12898221  T
Q  121 tagccagtaaatatcttgtaacttctctagacttggaacttgtcccaccaaat---agttttgagctaagtcgagtacttgtagggaagaagcatttaca 217  Q
    |||   | ||| || |||||| ||| ||||||||||||||||||| |||||||    |||||  | |||||| | || |||||||| |||||||||  ||    
T  12898220 tagaatggaaagattttgtaaattccctagacttggaacttgtccaaccaaattcatgttttctgataagtctaatatttgtagggtagaagcattagca 12898121  T
Q  218 atggaaatagggattggacctgagaattgatt 249  Q
    || |||||||| |||||||| |||||||||||    
T  12898120 atcgaaataggaattggaccagagaattgatt 12898089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 249
Target Start/End: Complemental strand, 12956839 - 12956602
Alignment:
Q  15 tattagaagctatcgaaagcatttctagtttactacaatttgtcaaatagtttaaaaactctaaatctataattgaattgttacctaaattgttgtatcc 114  Q
    ||||| ||| |||||||||| | | ||||||||| ||||| |||||||| |||| ||| |||||||| ||| ||||| ||||||||||||||||  ||      
T  12956839 tattataagatatcgaaagcttgtgtagtttactgcaattagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattg 12956740  T
Q  115 aaaacttagccagtaaatatcttgtaacttctctagacttggaacttgtcccaccaaata---gttttgagctaagtcgagtacttgtagggaagaagca 211  Q
     ||| ||||   | |||  |||||||| ||| ||||||||||||||||||| |||||||    ||| |   ||||||| | || |||||||| |||||||    
T  12956739 caaatttagattggaaaggtcttgtaaattccctagacttggaacttgtccaaccaaattcatgttgtctcctaagtctaatatttgtagggcagaagca 12956640  T
Q  212 tttacaatggaaatagggattggacctgagaattgatt 249  Q
    ||| |||| |||||||||||||||||||||||||||||    
T  12956639 tttgcaatcgaaatagggattggacctgagaattgatt 12956602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 249
Target Start/End: Original strand, 17924854 - 17925091
Alignment:
Q  15 tattagaagctatcgaaagcatttctagtttactacaatttgtcaaatagtttaaaaactctaaatctataattgaattgttacctaaattgttgtatcc 114  Q
    ||||| ||| |||||||| | | | ||||||||| |||||||||||||| ||||||||||||||||| ||| ||||||| | |||||||||||| | | |    
T  17924854 tattataagatatcgaaaacttgtgtagtttactgcaatttgtcaaatattttaaaaactctaaatccatagttgaattatcacctaaattgttttcttc 17924953  T
Q  115 aaaacttagccagtaaatatcttgtaacttctctagacttggaacttgtcccaccaaat---agttttgagctaagtcgagtacttgtagggaagaagca 211  Q
     ||| ||||   | |||  |||||||| ||| ||||||||||||||||||| |||||||    |||||  | |||||| | || |||||||| ||||||     
T  17924954 caaatttagaatggaaaggtcttgtaaattccctagacttggaacttgtccaaccaaattcatgttttctgataagtctaatatttgtagggcagaagcg 17925053  T
Q  212 tttacaatggaaatagggattggacctgagaattgatt 249  Q
    ||| |||| |||| ||||||||||||||||||||||||    
T  17925054 tttgcaatcgaaaaagggattggacctgagaattgatt 17925091  T

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