View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5748-Insertion-2 (Length: 740)
Name: NF5748-Insertion-2
Description: NF5748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5748-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 8 - 527
Target Start/End: Complemental strand, 2632492 - 2631973
Alignment:
| Q |
8 |
ctccaaacctacaattaacgtcacaaattttgtctgaaattgggtcattacagtgaccattgaatgtaggactctttacctcacaaccttcaatttgcac |
107 |
Q |
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| T |
2632492 |
ctccaaatctgcaattaatgtcacaaattttgtctgaaattgggtcattacagtgaccattgaatgtaggactctttacctcacaaccttcaatttgcac |
2632393 |
T |
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| Q |
108 |
cacagcttcttctgcattttcaataggaaacaaggtgtatgtttttaaaaagaagctatcaattaaaaagtaaacataatatgnnnnnnnnnatnnnnnn |
207 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2632392 |
cacagcttcttctgcattttcaataggaaacaaggtttatgtttttaaaaagaagctatcaattaaaaagtaaacataatatgtttattaaaaaaaaaaa |
2632293 |
T |
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| Q |
208 |
nnggtgtatatctcagaagaacttgnnnnnnnnnnnnnnnngtgcattaacgtatagacttacgagcagcaatgagaacaaagaggaagaagcacaacgc |
307 |
Q |
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| T |
2632292 |
aaggtgtatatctcagaagaacttgaaaaaataggaaaaaagtgcattaacgtatagacttacgagcagcaatgagaacaaagaggaagaagcacaacgc |
2632193 |
T |
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| Q |
308 |
agttagcagtattttcatctcaattatatattataatttccataaaatatctaaggtgtgatatcccaaaatccttagtgcttgttgtttataaagcctt |
407 |
Q |
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| T |
2632192 |
agttagcagtattttcatctcaattatatattataatttccataaaatatctaaggtgtgatatcccaaaatccctagtgcttgttgtttataaagcctt |
2632093 |
T |
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| Q |
408 |
aatttgaactcggaacaatacaactggtgcggtccaaccaaattataaaaagcaaacaattcannnnnnnnnnnnnnnnaaatccaaaaaatgattcttt |
507 |
Q |
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| T |
2632092 |
aatttgaactcggaacaatacaactggtgcggtccaaccaaattataaaaagcaaacaattcattttcttttcttttttaaatccaaaaagtgattcttt |
2631993 |
T |
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| Q |
508 |
ctcttacctctctaaacacc |
527 |
Q |
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| T |
2631992 |
ctcttacctctctaaacacc |
2631973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 603 - 740
Target Start/End: Complemental strand, 2631920 - 2631783
Alignment:
| Q |
603 |
aggttcctttccatacctctaaaaatccctttaattttctttaaatcaattttctcttaccttaaagtttgtttggatggagtagnnnnnnnnataagct |
702 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2631920 |
aggttcctttccatacctctaaaaatccctttaattttctttaaatcaattttctcttaccttaaagtttgtttggatggagtagttttttttataagct |
2631821 |
T |
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| Q |
703 |
aggagagaatacatgtatcaagaggaagcaacgacatt |
740 |
Q |
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| T |
2631820 |
aggagagaatacatgtatcaagaggaagcaacgacatt |
2631783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 126
Target Start/End: Complemental strand, 2630491 - 2630440
Alignment:
| Q |
75 |
aggactctttacctcacaaccttcaatttgcaccacagcttcttctgcattt |
126 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2630491 |
aggactctttttctcacaaccttcaatttgcaccacagcttcttctgcattt |
2630440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 568 - 603
Target Start/End: Complemental strand, 2631932 - 2631897
Alignment:
| Q |
568 |
cactccatctccaggttcctttccatacctctaaaa |
603 |
Q |
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| T |
2631932 |
cactccatctccaggttcctttccatacctctaaaa |
2631897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 343 - 417
Target Start/End: Complemental strand, 2634814 - 2634742
Alignment:
| Q |
343 |
atttccataaaatatctaaggtgtgatatcccaaaatccttagtgcttgttgtttataaagccttaatttgaact |
417 |
Q |
| |
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|||||| ||||||| |||| |||||||||||||||||| ||||||| | | ||||||||||||||||||||||| |
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| T |
2634814 |
atttccttaaaataactaac-tgtgatatcccaaaatccctagtgct-gctatttataaagccttaatttgaact |
2634742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 2618779 - 2618730
Alignment:
| Q |
78 |
actctttacctcacaaccttcaatttgcaccacagcttcttctgcatttt |
127 |
Q |
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||||||| ||||||||||||||| |||||||||| |||||||||||||| |
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| T |
2618779 |
actctttttctcacaaccttcaatctgcaccacagtttcttctgcatttt |
2618730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 2624213 - 2624165
Alignment:
| Q |
78 |
actctttacctcacaaccttcaatttgcaccacagcttcttctgcattt |
126 |
Q |
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||||||| ||||||||||||||| | |||||||||||||||||||||| |
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| T |
2624213 |
actctttttctcacaaccttcaatcttcaccacagcttcttctgcattt |
2624165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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