View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5748-Insertion-5 (Length: 360)

Name: NF5748-Insertion-5
Description: NF5748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5748-Insertion-5
NF5748-Insertion-5
[»] chr7 (1 HSPs)
chr7 (8-354)||(45679386-45679732)
[»] chr3 (3 HSPs)
chr3 (103-160)||(25991456-25991513)
chr3 (114-162)||(3384325-3384373)
chr3 (100-160)||(2417742-2417802)
[»] chr4 (1 HSPs)
chr4 (101-184)||(10452359-10452442)
[»] chr5 (1 HSPs)
chr5 (100-190)||(36522282-36522372)
[»] chr2 (3 HSPs)
chr2 (100-162)||(2336675-2336737)
chr2 (100-180)||(2323649-2323728)
chr2 (114-162)||(30323515-30323563)
[»] scaffold0113 (1 HSPs)
scaffold0113 (100-161)||(39890-39951)
[»] chr8 (5 HSPs)
chr8 (78-158)||(5870399-5870479)
chr8 (106-162)||(5974596-5974652)
chr8 (99-159)||(34835263-34835323)
chr8 (99-159)||(34835529-34835589)
chr8 (99-159)||(34835795-34835855)


Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 8 - 354
Target Start/End: Original strand, 45679386 - 45679732
Alignment:
Q  8 gttggtggcactcaacgggacgtgtcacctaaacaccttggtcagaaagactttcttcacattaagctttgaataatcatataaatgaatttgacaccac 107  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45679386 gttggtggccctcaacgggacgtgtcacctaaacaccttggtcagaaagactttcttcacattaagctttgaataatcatataaatgaatttgacaccac 45679485  T
Q  108 attataacccaaaactttaaggtattaagtttataggtcctctcacttataaagtatccaacatccgtttttccatccaatgtagccttttactcacact 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||    
T  45679486 attataacccaaaactttaaggtattaagtttataggtcctctcacttataaagtatccaacatccattttttcatccaatgtagacttttactcacact 45679585  T
Q  208 tgatatcaacatgtatttatggacaacattaaactgtgttttttatgtctagatatgaagcggttttggggtgagaagtgtcatctcaaacaaagaacgg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45679586 tgatatcaacatgtatttatggacaacattaaactgtgttttttatgtctaaatatgaagcggttttggggtgagaagtgtcatctcaaacaaagaacgg 45679685  T
Q  308 tctaattaaatcgtttgtaaggtttggctcgccatccagaggaggta 354  Q
    |||||||||||||||||||||||||||||| ||| ||| ||||||||    
T  45679686 tctaattaaatcgtttgtaaggtttggctcaccacccataggaggta 45679732  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 25991513 - 25991456
Alignment:
Q  103 accacattataacccaaaactttaaggtattaagtttataggtcctctcacttataaa 160  Q
    |||||| | ||||||||||| |||||| |||| |||||||||| ||||||||||||||    
T  25991513 accacactttaacccaaaaccttaaggcattaggtttataggttctctcacttataaa 25991456  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 3384325 - 3384373
Alignment:
Q  114 acccaaaactttaaggtattaagtttataggtcctctcacttataaagt 162  Q
    |||||||||||||||| ||||||||||| ||||||||  ||||||||||    
T  3384325 acccaaaactttaaggcattaagtttatgggtcctcttccttataaagt 3384373  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 2417802 - 2417742
Alignment:
Q  100 gacaccacattataacccaaaactttaaggtattaagtttataggtcctctcacttataaa 160  Q
    ||||||||| | ||| |||||||| ||| | ||| ||||||||| ||||||||||||||||    
T  2417802 gacaccacaatttaatccaaaactctaaagcattgagtttatagatcctctcacttataaa 2417742  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 184
Target Start/End: Original strand, 10452359 - 10452442
Alignment:
Q  101 acaccacattataacccaaaactttaaggtattaagtttataggtcctctcacttataaagtatccaacatccgtttttccatc 184  Q
    |||||||||| ||||  |||||||||||| || |||||||| |||||||||  ||||| ||| |  ||||||| ||||||||||    
T  10452359 acaccacattttaactaaaaactttaaggcatgaagtttatgggtcctctcttttatatagtgttaaacatccatttttccatc 10452442  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 190
Target Start/End: Original strand, 36522282 - 36522372
Alignment:
Q  100 gacaccacattataacccaaaactttaaggtattaagtttataggtcctctcacttataaagtatccaacatccgtttttccatccaatgt 190  Q
    ||||||||| | | ||||||||| ||||| || |  |||||| |||||||||||||||||| | | |||| ||| |||||| |||||||||    
T  36522282 gacaccacactcttacccaaaaccttaagataatgggtttattggtcctctcacttataaaatgttcaacttccatttttctatccaatgt 36522372  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 162
Target Start/End: Complemental strand, 2336737 - 2336675
Alignment:
Q  100 gacaccacattataacccaaaactttaaggtattaagtttataggtcctctcacttataaagt 162  Q
    ||||||||||  ||||||||||  |||||| ||| | ||||| ||||||||||||||||||||    
T  2336737 gacaccacatcttaacccaaaatcttaaggcattgaatttatgggtcctctcacttataaagt 2336675  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 180
Target Start/End: Complemental strand, 2323728 - 2323649
Alignment:
Q  100 gacaccacattataacccaaaactttaaggtattaagtttataggtcctctcacttataaagtatccaacatccgtttttc 180  Q
    ||||||||||  ||||| ||||| |||||| |||  |||||| | |||||||||||||||||| |||||| ||| ||||||    
T  2323728 gacaccacatcttaacctaaaaccttaaggcattg-gtttatggatcctctcacttataaagtgtccaacctccatttttc 2323649  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 30323563 - 30323515
Alignment:
Q  114 acccaaaactttaaggtattaagtttataggtcctctcacttataaagt 162  Q
    ||||||||| |||||| | | ||||||||||||||||||||| ||||||    
T  30323563 acccaaaaccttaaggcaatgagtttataggtcctctcacttctaaagt 30323515  T

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Target: scaffold0113 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 161
Target Start/End: Complemental strand, 39951 - 39890
Alignment:
Q  100 gacaccacattataacccaaaactttaaggtattaagtttataggtcctctcacttataaag 161  Q
    ||||||||||| | | |||||| ||||||||| ||||||||||  || ||||||||||||||    
T  39951 gacaccacatttttaaccaaaattttaaggtaataagtttatatctcatctcacttataaag 39890  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 158
Target Start/End: Complemental strand, 5870479 - 5870399
Alignment:
Q  78 gaataatcatataaatgaatttgacaccacattataacccaaaactttaaggtattaagtttataggtcctctcacttata 158  Q
    ||||||||| | |||| | || || ||||||| ||||| ||||| |||||| |||| ||||||| ||| ||||||||||||    
T  5870479 gaataatcacacaaataagttggataccacatcataactcaaaattttaagatattgagtttatgggttctctcacttata 5870399  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 5974652 - 5974596
Alignment:
Q  106 acattataacccaaaactttaaggtattaagtttataggtcctctcacttataaagt 162  Q
    ||||| ||||| ||||| |||||  |||| ||||||||||| |||||||||||||||    
T  5974652 acattttaaccaaaaacattaagacattaggtttataggtcatctcacttataaagt 5974596  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 34835323 - 34835263
Alignment:
Q  99 tgacaccacattataacccaaaactttaaggtattaagtttataggtcctctcacttataa 159  Q
    |||||||||| | | |||||||||||||||| | | ||||||| |||||||| ||||||||    
T  34835323 tgacaccacactcttacccaaaactttaaggcaatgagtttatgggtcctcttacttataa 34835263  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 34835589 - 34835529
Alignment:
Q  99 tgacaccacattataacccaaaactttaaggtattaagtttataggtcctctcacttataa 159  Q
    |||||||||| | | |||||||||||||||| | | ||||||| |||||||| ||||||||    
T  34835589 tgacaccacactcttacccaaaactttaaggcaatgagtttatgggtcctcttacttataa 34835529  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 34835855 - 34835795
Alignment:
Q  99 tgacaccacattataacccaaaactttaaggtattaagtttataggtcctctcacttataa 159  Q
    |||||||||| | | |||||||||||||||| | | ||||||| |||||||| ||||||||    
T  34835855 tgacaccacactcttacccaaaactttaaggcaatgagtttatgggtcctcttacttataa 34835795  T

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