View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5748_high_3 (Length: 205)
Name: NF5748_high_3
Description: NF5748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5748_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 9623126 - 9623278
Alignment:
| Q |
18 |
taaatgaatccaaaacctatgttccatgggctctcaatttcttttttcaaacgtaaaatctattnnnnnnnnn--ttaagctcaaatagttaataaattt |
115 |
Q |
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| T |
9623126 |
taaatgaatccaaaacctatgttccatgggctctcaatttcttttttcaaacgtaaaatctattaaaaaaaaaaattaagctcaaatagttaataaattt |
9623225 |
T |
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| Q |
116 |
tattaaataatcaatcgtttgaaagattttaagttcaattttttatgaaacaa |
168 |
Q |
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| T |
9623226 |
tattaaataatcaatcgtttgaaagattttaagttcaattttttatggaacaa |
9623278 |
T |
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