View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5748_low_2 (Length: 249)
Name: NF5748_low_2
Description: NF5748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5748_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 11217929 - 11218148
Alignment:
| Q |
18 |
caacaattgtattactactgctactggttcctttactatcttgatggttgagtgtggtttggttaggattaagatgtttgggaaattttttacattgttt |
117 |
Q |
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| T |
11217929 |
caacaattgtattactactactactggttcctttactatcttgatggttgagtgtggtttggttaggattaagatgtttgggaaattttttacattgttt |
11218028 |
T |
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| Q |
118 |
ttgtaaatgagttgctaaattggtggttccatctttgtgtgaatcggcagtataagatgcatttttacaccacttacactcagcccgaccattttctttt |
217 |
Q |
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| T |
11218029 |
ttgtaaatgagttgctaaattggtggttccatctttgtgtgaatcggcagcataagatacattttcacaccacttacactcagcccgaccattttctttt |
11218128 |
T |
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| Q |
218 |
gtaaaatgctcccaaaccta |
237 |
Q |
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|||||||||||||||||||| |
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| T |
11218129 |
gtaaaatgctcccaaaccta |
11218148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 79 - 235
Target Start/End: Complemental strand, 38335927 - 38335771
Alignment:
| Q |
79 |
gttaggattaagatgtttgggaaattttttacattgtttttgtaaatgagttgctaaattggtggttccatctttgtgtgaatcggcagtataagatgca |
178 |
Q |
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| T |
38335927 |
gttaggatcaagatgtttgggaaattttttacattgttttcttaaatgagttgataaattggaggttccactattgtgtgaatcagcagcataagatgca |
38335828 |
T |
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| Q |
179 |
tttttacaccacttacactcagcccgaccattttcttttgtaaaatgctcccaaacc |
235 |
Q |
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| T |
38335827 |
tttttacaccacttacacatagcccgacccttttcttttataaaatgatcccaaacc |
38335771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 79 - 235
Target Start/End: Original strand, 29639126 - 29639282
Alignment:
| Q |
79 |
gttaggattaagatgtttgggaaattttttacattgtttttgtaaatgagttgctaaattggtggttccatctttgtgtgaatcggcagtataagatgca |
178 |
Q |
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|
|||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||| ||||||||||| |||| |||||||||| |
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| T |
29639126 |
gttaggatcaagatgtttgggaaattttttacattgttttcttaaatgagttgataaattggaggttccactattgtgtgaatcagcagcataagatgca |
29639225 |
T |
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| Q |
179 |
tttttacaccacttacactcagcccgaccattttcttttgtaaaatgctcccaaacc |
235 |
Q |
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|||||||||||||||||| ||||||||| ||||||||| ||||||| || |||||| |
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| T |
29639226 |
tttttacaccacttacacatagcccgacccttttcttttataaaatgatcacaaacc |
29639282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 79 - 235
Target Start/End: Original strand, 20419132 - 20419288
Alignment:
| Q |
79 |
gttaggattaagatgtttgggaaattttttacattgtttttgtaaatgagttgctaaattggtggttccatctttgtgtgaatcggcagtataagatgca |
178 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||| ||||||||||| |||| |||||||||| |
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| T |
20419132 |
gttaggatcaagatgtttgggaaattttttacattgttttcttaaatgagttgataaattggaggttccactattgtgtgaatcagcagcataagatgca |
20419231 |
T |
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| Q |
179 |
tttttacaccacttacactcagcccgaccattttcttttgtaaaatgctcccaaacc |
235 |
Q |
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|||||||||||||||||| ||||||||| ||||||||| ||||||| || |||||| |
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| T |
20419232 |
tttttacaccacttacacatagcccgacccttttcttttataaaatgatcacaaacc |
20419288 |
T |
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