View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5749-Insertion-1 (Length: 53)
Name: NF5749-Insertion-1
Description: NF5749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5749-Insertion-1 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 47; Significance: 9e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-19
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 24754758 - 24754804
Alignment:
| Q |
7 |
aatatcatccaaaaccagtgtcatgttgacgactgatggtgtaggcg |
53 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24754758 |
aatatcatccaaaaccagtgtcatgttgacgactgatggtgtaggcg |
24754804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 24746722 - 24746769
Alignment:
| Q |
7 |
aatatcatccaaaacc-agtgtcatgttgacgactgatggtgtaggcg |
53 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
24746722 |
aatatcatccaaaacccagtgtcatgttgacgattgatggtgtaggcg |
24746769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University