View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5749-Insertion-12 (Length: 131)
Name: NF5749-Insertion-12
Description: NF5749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5749-Insertion-12 |
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| [»] scaffold0354 (1 HSPs) |
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Alignment Details
Target: scaffold0354 (Bit Score: 112; Significance: 5e-57; HSPs: 1)
Name: scaffold0354
Description:
Target: scaffold0354; HSP #1
Raw Score: 112; E-Value: 5e-57
Query Start/End: Original strand, 5 - 124
Target Start/End: Complemental strand, 12559 - 12440
Alignment:
| Q |
5 |
acaaaaacgacacaccctttccatggtagagaaacagagtaccttttatagcaaagccttggaatggcatgcattgcataaaaccacttattatgcttct |
104 |
Q |
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| T |
12559 |
acaaaaatgacacactctttccatggtagagaaacagagtaccttttatagcaaagccttggaatggcatgcattgcataaaaccacttattatgcttct |
12460 |
T |
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| Q |
105 |
caaatctctaacttcatctc |
124 |
Q |
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| T |
12459 |
caaatctctaacttcatctc |
12440 |
T |
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