View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5749-Insertion-2 (Length: 902)
Name: NF5749-Insertion-2
Description: NF5749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5749-Insertion-2 |
 | |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 775; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 775; E-Value: 0
Query Start/End: Original strand, 8 - 902
Target Start/End: Original strand, 4270474 - 4271384
Alignment:
| Q |
8 |
catttttgagtaaattcagttctgtgaagatggttggtaagaaagggtgtgttccaatcattgactataagcaattagaaaaagccactggaaatttcaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4270474 |
catttttgagtaaattcagttctgtgaggttggttggtaagaaagggtgtgttccaatcattgactataagcaattagaaaaagccactggaaatttcaa |
4270573 |
T |
|
| Q |
108 |
ggaaagtaacatcataggtgagggtggttttggatgtgtttacaaggctaggttggatgataatttagatgttgccatcaagaagttgaactgtgaatgt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4270574 |
ggaaagtaacatcataggtgagggtggttttggatgtgtttacaaggctaggttggatgataatttagatgttgccatcaagaagttgaactgtgaatgt |
4270673 |
T |
|
| Q |
208 |
caatatgctgagagagaatttgaggtaattcttgctaataatttatttatttattttgttgacttaannnnnnnnnctaatgatgagttggaaaaaactg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
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|
| T |
4270674 |
caatatgctgagagagaatttgaggtaattcttgctaataatttatttatttattttgttgacttaattttcttttttaatgaagagttggaaaaaactg |
4270773 |
T |
|
| Q |
308 |
tattgaatagttggatgagtttccagaatgaggtggatttgttaagtaaaattcagcatccaaatgtaatttctctactgggctgtagcagtaatgagga |
407 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4270774 |
tattgaatagttggatgaatttccagaatgaggtggatttgttaagtaaaattcaacatccaaatgtaatttctctactgggctgtagcagtaatgagga |
4270873 |
T |
|
| Q |
408 |
ttcaaggtttattgtctatgagttgatgcaaaatggatcattggaaactcaattacatggtaaaaatattgtttctgatatcttattttattggatttga |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4270874 |
ttcaaggtttattgtctatgagttgatgcaaaatggatcattggaaactcaattacatggtaaaaatattgtttctgatatcttattttattggatttga |
4270973 |
T |
|
| Q |
508 |
ctcttctaaatttcgctctttcgcttttaagactaatataagtgattataatcgttacggaaaaatttcaccaatgattgttatgtcaacctttatagcg |
607 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4270974 |
ctcttctaaattgcgctctttcgcttttaagactaatataagtgattataatcgttacggaaaaatttcaccaatgattgttatgtcaacctttatagca |
4271073 |
T |
|
| Q |
608 |
ccgacatttcaatttgaaggtgtgtctgttgtctgatac------------------gtgtcaatgtccgacacaactaactttcgtggttacattcaat |
689 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4271074 |
ccgacatttcaatttgaaggtgtgtctgttgtctgatacgtgtctgttgtctgttaagtgtcaatgtccgacacaactaactttcgtggttacattcaat |
4271173 |
T |
|
| Q |
690 |
tattgttattatttgataatagaagactcgtatcaaaagttaatgaggtcaatgataaaataatactaatcactattttccaaaaattgattatgtgaag |
789 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4271174 |
tattgttattatctgataatagaagactcgtatcaaaagttaatgaggtcaatgataaaataatactaatcactattttccaaaaattgattatgtgaag |
4271273 |
T |
|
| Q |
790 |
gaccatctcatggctcagcattgacttggcatatgaggatgaagattgctcttgacacagctaggtgacctttctttaatcaatttccattccctttcct |
889 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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|
| T |
4271274 |
gaccatctcatggctcagcattgacttggcatatgaggatgaagattgctcttgacacagctaggtgacc-ttctttaatcaatttccatt-cctttcct |
4271371 |
T |
|
| Q |
890 |
atgtgctctaatg |
902 |
Q |
| |
|
||||||||||||| |
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|
| T |
4271372 |
atgtgctctaatg |
4271384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 759; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 759; E-Value: 0
Query Start/End: Original strand, 8 - 902
Target Start/End: Original strand, 2806818 - 2807728
Alignment:
| Q |
8 |
catttttgagtaaattcagttctgtgaagatggttggtaagaaagggtgtgttccaatcattgactataagcaattagaaaaagccactggaaatttcaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2806818 |
catttttgagtaaattcagttctgtgaagatggttggtaagaaagggtgtgttccaatcattgactataagcaattagaaaaagccactggaaatttcaa |
2806917 |
T |
|
| Q |
108 |
ggaaagtaacatcataggtgagggtggttttggatgtgtttacaaggctaggttggatgataatttagatgttgccatcaagaagttgaactgtgaatgt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2806918 |
ggaaagtaacatcataggtgagggtggttttggatgtgtttacaaggctaggttggatgataatttagatgttgccatcaagaagttgaactgtgaatgt |
2807017 |
T |
|
| Q |
208 |
caatatgctgagagagaatttgaggtaattcttgctaataatttatttatttattttgttgacttaannnnnnnnnctaatgatgagttggaaaaaactg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
2807018 |
caatatgctgagagagaatttgaggtaattcttgctaataatttatttatttattttgttgacttaattttcttttgtaatgaagagttggaaaaaactg |
2807117 |
T |
|
| Q |
308 |
tattgaatagttggatgagtttccagaatgaggtggatttgttaagtaaaattcagcatccaaatgtaatttctctactgggctgtagcagtaatgagga |
407 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2807118 |
tattgaatagttggatgaatttacagaatgaggtggatttgttaagtaaaattcaacatccaaatgtaatttctctactgggctgtagcagtaatgagga |
2807217 |
T |
|
| Q |
408 |
ttcaaggtttattgtctatgagttgatgcaaaatggatcattggaaactcaattacatggtaaaaatattgtttctgatatcttattttattggatttga |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2807218 |
ttcaaggtttattgtctatgagttgatgcaaaatggatcattggaaactcaattacatggtaaaaatattgtttctgatatcttattttattggatttga |
2807317 |
T |
|
| Q |
508 |
ctcttctaaatttcgctctttcgcttttaagactaatataagtgattataatcgttacggaaaaatttcaccaatgattgttatgtcaacctttatagcg |
607 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2807318 |
ctcttctaaattgtgctcttttgcttttaagactaatataagtgattataatcgttacggaaaaatttcaccaatgattgttatgtcaacctttatagca |
2807417 |
T |
|
| Q |
608 |
ccgacatttcaatttgaaggt------------------gtgtctgttgtctgatacgtgtcaatgtccgacacaactaactttcgtggttacattcaat |
689 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2807418 |
ccgacgtttcaatttgaaggtgtgtctgctgtctgatacgtgtctgttgtctgatacgtgtcaaggtccgacacaactaactttcgtggttacattcaat |
2807517 |
T |
|
| Q |
690 |
tattgttattatttgataatagaagactcgtatcaaaagttaatgaggtcaatgataaaataatactaatcactattttccaaaaattgattatgtgaag |
789 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2807518 |
tattgttattatctgataatagaagactcgtatcaaaagttaatgaggtcaatgataaaataatactaataactattttccaaaaattgattatgtgaag |
2807617 |
T |
|
| Q |
790 |
gaccatctcatggctcagcattgacttggcatatgaggatgaagattgctcttgacacagctaggtgacctttctttaatcaatttccattccctttcct |
889 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
2807618 |
gaccatctcatggctcagcattgacttggcatatgaggatgaagattgctcttgacacagctaggtgacc-ttctttaatcaatttccatt-cctttcct |
2807715 |
T |
|
| Q |
890 |
atgtgctctaatg |
902 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2807716 |
atgtgctctaatg |
2807728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 1e-28; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 313 - 470
Target Start/End: Complemental strand, 49124818 - 49124661
Alignment:
| Q |
313 |
aatagttggatgagtttccagaatgaggtggatttgttaagtaaaattcagcatccaaatgtaatttctctactgggctgtagcagtaatgaggattcaa |
412 |
Q |
| |
|
|||||| |||||| ||| ||||||||||||||||| || ||||||||||||||||||||| |||||||| | || || ||||||| ||||| || | |
|
|
| T |
49124818 |
aatagtgggatgaatttgcagaatgaggtggatttattgagtaaaattcagcatccaaatataatttctttgctcggttgtagcattaatggagacatga |
49124719 |
T |
|
| Q |
413 |
ggtttattgtctatgagttgatgcaaaatggatcattggaaactcaattacatggtaa |
470 |
Q |
| |
|
| |||||||| |||||||| |||||||||||||| |||||| ||| |||||||||||| |
|
|
| T |
49124718 |
gatttattgtgtatgagttaatgcaaaatggatccttggaagctctattacatggtaa |
49124661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 785 - 857
Target Start/End: Complemental strand, 49124542 - 49124470
Alignment:
| Q |
785 |
tgaaggaccatctcatggctcagcattgacttggcatatgaggatgaagattgctcttgacacagctaggtga |
857 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
49124542 |
tgaaggaccatctcatggctcaggattgacttggcatatgagaatgaagattgctcttgacacagcaaggtga |
49124470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 52 - 191
Target Start/End: Complemental strand, 49125059 - 49124920
Alignment:
| Q |
52 |
gggtgtgttccaatcattgactataagcaattagaaaaagccactggaaatttcaaggaaagtaacatcataggtgagggtggttttggatgtgtttaca |
151 |
Q |
| |
|
|||||||||||||| ||||| || |||||| |||||||| | || | ||||| |||||||||||||| | |||| |||||||||||||||||||||| |
|
|
| T |
49125059 |
gggtgtgttccaataattgattacaagcaaatagaaaaatcgaccgacaattttcaggaaagtaacatcttgggtgtaggtggttttggatgtgtttaca |
49124960 |
T |
|
| Q |
152 |
aggctaggttggatgataatttagatgttgccatcaagaa |
191 |
Q |
| |
|
|||| || ||||||||||| |||||||| ||||||| |
|
|
| T |
49124959 |
aggcacaatttgatgataatttggatgttgctgtcaagaa |
49124920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 6e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 785 - 857
Target Start/End: Complemental strand, 11683414 - 11683342
Alignment:
| Q |
785 |
tgaaggaccatctcatggctcagcattgacttggcatatgaggatgaagattgctcttgacacagctaggtga |
857 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
11683414 |
tgaaggaaaatctcatggctcaggattgacttggcatatgagaatgaagattgctcttgacacagcaaggtga |
11683342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 313 - 403
Target Start/End: Complemental strand, 11683635 - 11683545
Alignment:
| Q |
313 |
aatagttggatgagtttccagaatgaggtggatttgttaagtaaaattcagcatccaaatgtaatttctctactgggctgtagcagtaatg |
403 |
Q |
| |
|
|||||| |||||| ||| ||||||||||||||||| || ||||||||||||||||||||| |||||||| |||| || ||||||| ||||| |
|
|
| T |
11683635 |
aatagtgggatgaatttgcagaatgaggtggatttattgagtaaaattcagcatccaaatataatttctttactcggttgtagcattaatg |
11683545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 788 - 857
Target Start/End: Complemental strand, 18988604 - 18988535
Alignment:
| Q |
788 |
aggaccatctcatggctcagcattgacttggcatatgaggatgaagattgctcttgacacagctaggtga |
857 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| || |||||| ||||||||||| | |||||| |
|
|
| T |
18988604 |
aggaccatctcatggctcaggattgacttggcatatgagaattaagatttctcttgacacaacaaggtga |
18988535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 788 - 857
Target Start/End: Original strand, 30341157 - 30341226
Alignment:
| Q |
788 |
aggaccatctcatggctcagcattgacttggcatatgaggatgaagattgctcttgacacagctaggtga |
857 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| || |||||| ||||||||||| | |||||| |
|
|
| T |
30341157 |
aggaccatctcatggctcaggattgacttggcatatgagaattaagatttctcttgacacaacaaggtga |
30341226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 788 - 857
Target Start/End: Original strand, 23916920 - 23916989
Alignment:
| Q |
788 |
aggaccatctcatggctcagcattgacttggcatatgaggatgaagattgctcttgacacagctaggtga |
857 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| || |||||| ||||||||||| | |||||| |
|
|
| T |
23916920 |
aggaccatctcatggctcaggattgacttggcatatgagaattaagatttctcttgacacaacaaggtga |
23916989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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