View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5749-Insertion-3 (Length: 875)
Name: NF5749-Insertion-3
Description: NF5749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5749-Insertion-3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 830; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 830; E-Value: 0
Query Start/End: Original strand, 6 - 875
Target Start/End: Original strand, 52375023 - 52375890
Alignment:
| Q |
6 |
caatgctcacagttgaagaaactctcacctttgcagctgaattccgtttaccgcgatcactctcaaaatcaaagaaaaacgctcgtgttcaagctttgat |
105 |
Q |
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| T |
52375023 |
caatgctcacagttgaagaaactctcacctttgcagctgaattccgattaccgcgatcactctcaaaatcaaagaaaaacgctcgtgttcaagctttgat |
52375122 |
T |
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| Q |
106 |
tgatcaactaggactccgcaacgcagcgaaaacagttatcggagatgaaggtcaccgtggagtctctggtggagaaaggcgtcgagtttcaatcggaatc |
205 |
Q |
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| T |
52375123 |
tgatcaactaggactccgcaacgcagcgaaaacagttatcggagacgaaggtcaccgtggagtctctggtggagaaaggcgtcgagtttcaatcggaatc |
52375222 |
T |
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| Q |
206 |
gacataatccatgatccaatagtgctcttcctagatgaaccaacttcaggattggattccacaagtgctttcatggttgtgtaagtacttcagagaattg |
305 |
Q |
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| T |
52375223 |
gacataatccatgatccaatagtgctcttcctagatgaaccaacttcaggattggattccacaagtgctttcatggttgttaaagtacttcagagaattg |
52375322 |
T |
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| Q |
306 |
cacaaagtggaagcatcgtgatcatgtcaattcatcaaccaagttacagaatcttaggtcttcttgatcgtatgatcttcttatcgcgtggacagacagt |
405 |
Q |
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| T |
52375323 |
cacaaagtggaagcatcgtgatcatgtcaattcatcaaccaagttacagaatcttaggtcttcttgatcgtatgatcttcttatcgcgtggacagacagt |
52375422 |
T |
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| Q |
406 |
ttacagcggttcaccatcgcagttaccttcatactttgcagaattcggccatcccatacctgaaggtgataaccgaacagaattcgcgttagacctgatt |
505 |
Q |
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| T |
52375423 |
ttacagcggttcaccatcgcagttaccttcatactttgcagaattcggccatcccatacctgaaggtgataaccgaacagaattcgcgttagacctgatt |
52375522 |
T |
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| Q |
506 |
cgcgaattggaaggttcaccaggaggaacaaaaagcttagttgaattcaacaaatcatggcaaagcatgaccaaacttcacaacaacaatgacatttcac |
605 |
Q |
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| T |
52375523 |
cgcgaattggaaggttcaccaggaggaacaaaaagcttagttgaattcaacaaatcatggcaaagcatgaccaaacttcacaacaacaatgacatttcac |
52375622 |
T |
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| Q |
606 |
aaaatgcaacaccgtcgttatctttgaaggaagctatcagcgctagcatttccagagggaaactagtttctggcgcaacagctgcaactaattcaaatgc |
705 |
Q |
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| T |
52375623 |
aaaatgcaacaccgtcgttatctttgaaggaagctatcagcgctagcatttccagagggaaattagtttctggcgcaacagctgcaactaattcaaatgc |
52375722 |
T |
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| Q |
706 |
aatagccacatcaccatcttcttcatcatcctcaattgtgcctacttatgcaaatccgttttgggattgagttattaacactttcgaagcgttcaataac |
805 |
Q |
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| T |
52375723 |
aatagccacatcaccatcttcttcatcatcctcaatcgtgcctacttatgcaaatccgtttt-ggattgagttattaacactttcgaagcgttcaataac |
52375821 |
T |
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| Q |
806 |
taaattcaaggcgaatgcctgaactatttgggataagattgggcgctgttatggtaactggtttcattct |
875 |
Q |
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| T |
52375822 |
t-aattcaaggcgaatgcctgaactatttgggataagattgggcgctgttatggtaactggtttcattct |
52375890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 8 - 358
Target Start/End: Complemental strand, 40384128 - 40383778
Alignment:
| Q |
8 |
atgctcacagttgaagaaactctcacctttgcagctgaattccgtttaccgcgatcactctcaaaatcaaagaaaaacgctcgtgttcaagctttgattg |
107 |
Q |
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| T |
40384128 |
atgctcaccgtggaagaaactctcatgttctctgctgagtttcgtctccctcgctctctctccaaatcaaagaaaaaagctcgtgtccaagcactcatcg |
40384029 |
T |
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| Q |
108 |
atcaactaggactccgcaacgcagcgaaaacagttatcggagatgaaggtcaccgtggagtctctggtggagaaaggcgtcgagtttcaatcggaatcga |
207 |
Q |
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| T |
40384028 |
accagctcggtctccgcaacgctgcctcaactgtcatcggagatgaaggtcaccgtggtgtttccggtggagaacgccgccgtgtctccatcggcacaga |
40383929 |
T |
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| Q |
208 |
cataatccatgatccaatagtgctcttcctagatgaaccaacttcaggattggattccacaagtgctttcatggttgtgtaagtacttcagagaattgca |
307 |
Q |
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| T |
40383928 |
catcatccacgatccaatcattttgttcttggatgaaccaacctctggacttgactctacaagcgcttacatggtggtgaaggttttgcagagaattgct |
40383829 |
T |
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| Q |
308 |
caaagtggaagcatcgtgatcatgtcaattcatcaaccaagttacagaatc |
358 |
Q |
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| T |
40383828 |
cagagcggtagcatcgtcatgatgaccgttcatcaaccaagctacagaatc |
40383778 |
T |
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