View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5749-Insertion-4 (Length: 515)

Name: NF5749-Insertion-4
Description: NF5749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5749-Insertion-4
NF5749-Insertion-4
[»] chr4 (8 HSPs)
chr4 (190-367)||(1390680-1390860)
chr4 (11-122)||(1390344-1390455)
chr4 (456-515)||(1390865-1390924)
chr4 (130-194)||(1359539-1359603)
chr4 (131-194)||(1390489-1390552)
chr4 (356-445)||(45645951-45646040)
chr4 (141-176)||(45645613-45645648)
chr4 (243-295)||(45645847-45645899)
[»] chr5 (8 HSPs)
chr5 (220-445)||(34666319-34666547)
chr5 (355-445)||(34646763-34646853)
chr5 (356-440)||(19648706-19648790)
chr5 (141-176)||(34646414-34646449)
chr5 (141-176)||(34666108-34666143)
chr5 (243-321)||(19648822-19648900)
chr5 (141-178)||(19649094-19649131)
chr5 (220-299)||(34646625-34646707)
[»] chr8 (8 HSPs)
chr8 (355-445)||(14192654-14192744)
chr8 (243-459)||(14201545-14201755)
chr8 (371-481)||(14183738-14183851)
chr8 (371-445)||(40718477-40718551)
chr8 (134-176)||(40718111-40718153)
chr8 (134-178)||(14183354-14183398)
chr8 (249-322)||(14183601-14183674)
chr8 (251-311)||(40718360-40718420)
[»] chr6 (2 HSPs)
chr6 (372-442)||(34303447-34303517)
chr6 (362-444)||(33888832-33888914)


Alignment Details
Target: chr4 (Bit Score: 147; Significance: 3e-77; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 190 - 367
Target Start/End: Original strand, 1390680 - 1390860
Alignment:
Q  190 tggtattttaaacctttgttattcatttgcatcaaatgaaaatgattttccttt---cactgcacattttcaaggtgcagatattaagttgcattctatt 286  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| |   ||||||||||||| |||||||||||||||||||||| ||||||    
T  1390680 tggtattttaaacctttgttattcatttgcatcaaatgaatatgattttcctataatcactgcacattttgaaggtgcagatattaagttgcaatctatt 1390779  T
Q  287 agcacctttgttcaagttgccgatggggttgtttgtttggctcttgtcccatctcgaatcaataaagtcatctttgggaat 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1390780 agcacctttgttcaagttgccgatggggttgtttgtttggctcttgtcccatctcgaatcaataaaggcatctttgggaat 1390860  T

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Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 1390344 - 1390455
Alignment:
Q  11 gacataataatacattgtcatttgaaggcaagagctctggtctggttggccctggaaatggacccatgtctcttataaatcaattgggttcatcaattgg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1390344 gacataataatacattgtcatttgaaggcaagagctctggtctggttggccttggaaatggacccgtgtctcttataaatcaattgggttcatcaattgg 1390443  T
Q  111 agaagctgctat 122  Q
     |||||||||||    
T  1390444 tgaagctgctat 1390455  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 456 - 515
Target Start/End: Original strand, 1390865 - 1390924
Alignment:
Q  456 tgtagactttgtttactttactccttgaatttataataataataatagtaattcattttt 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1390865 tgtagactttgtttactttactccttgaatttataataataataatagtaattcattttt 1390924  T

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Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 1359539 - 1359603
Alignment:
Q  130 aataacattgaaagcatttagtgttggaaacaaaagagtagaatttgaaaagcaatcaaatggta 194  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  1359539 aataacattgaaagcatttagtgttggaaacaaaatagtggaatttgaaaagcaatcaaatggta 1359603  T

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Target: chr4; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 131 - 194
Target Start/End: Original strand, 1390489 - 1390552
Alignment:
Q  131 ataacattgaaagcatttagtgttggaaacaaaagagtagaatttgaaaagcaatcaaatggta 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  1390489 ataacattgaaagcatttagtgttggaaacaaaagagtagaattttcaaagcaatcaaatggta 1390552  T

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Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 356 - 445
Target Start/End: Original strand, 45645951 - 45646040
Alignment:
Q  356 atctttgggaatttggctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtaccaaa 445  Q
    |||||||| || |||||||||||||||||||||||||||| |||||||||||||  ||  ||||| ||||| |||| |||||||||||||    
T  45645951 atctttggtaacttggctcaacaaaatttgttggttggttgtgatcttcaacaaggaacagtgtcctttaaacctactgattgtaccaaa 45646040  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 141 - 176
Target Start/End: Original strand, 45645613 - 45645648
Alignment:
Q  141 aagcatttagtgttggaaacaaaagagtagaatttg 176  Q
    ||||||||||||||||||||||||||||||||||||    
T  45645613 aagcatttagtgttggaaacaaaagagtagaatttg 45645648  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 295
Target Start/End: Original strand, 45645847 - 45645899
Alignment:
Q  243 tcactgcacattttcaaggtgcagatattaagttgcattctattagcaccttt 295  Q
    |||| ||||||||| ||||||| ||| || |||||||||||||||| ||||||    
T  45645847 tcaccgcacattttaaaggtgctgatgttgagttgcattctattagtaccttt 45645899  T

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Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 220 - 445
Target Start/End: Original strand, 34666319 - 34666547
Alignment:
Q  220 atcaaatgaaaatgattttccttt---cactgcacattttcaaggtgcagatattaagttgcattctattagcacctttgttcaagttgccgatggggtt 316  Q
    |||||||||| ||||||||||| |   ||| ||||||||| ||||||| |||||| |||||||||||||||| |||||||||| | || | |||||  ||    
T  34666319 atcaaatgaatatgattttcctataatcaccgcacattttaaaggtgccgatattgagttgcattctattagtacctttgttccaattactgatggtatt 34666418  T
Q  317 gtttgtttggctcttgtcccatctcgaatcaataaagt--catctttgggaatttggctcaacaaaatttgttggttggttatgatcttcaacaaaaaat 414  Q
    ||||| || ||| |    |||||||   ||||    ||  |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||     
T  34666419 gtttgctttgctttccaaccatctcc--tcaacttggttccatctttgggaacttggctcaacaaaatttgttggttggttacgatcttcaacaaaaaac 34666516  T
Q  415 tgtgtcttttaagcctattgattgtaccaaa 445  Q
     ||||| ||||| |||| |||||||||||||    
T  34666517 agtgtcgtttaaacctactgattgtaccaaa 34666547  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 355 - 445
Target Start/End: Original strand, 34646763 - 34646853
Alignment:
Q  355 catctttgggaatttggctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtaccaaa 445  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||  ||||| ||||| |||| |||||||||||||    
T  34646763 catctttgggaacttggctcaacaaaatttgttggttggttacgatcttcaacaaaaaacagtgtcgtttaaacctactgattgtaccaaa 34646853  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 356 - 440
Target Start/End: Complemental strand, 19648790 - 19648706
Alignment:
Q  356 atctttgggaatttggctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgta 440  Q
    |||||||| || ||||| |||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||    
T  19648790 atctttggaaacttggcacaactaaatttgttggttggttatgatcttcaacaaaatattgtgtcgtttaagcctagtgattgta 19648706  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 141 - 176
Target Start/End: Original strand, 34646414 - 34646449
Alignment:
Q  141 aagcatttagtgttggaaacaaaagagtagaatttg 176  Q
    ||||||||||||||||||||||||||||||||||||    
T  34646414 aagcatttagtgttggaaacaaaagagtagaatttg 34646449  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 141 - 176
Target Start/End: Original strand, 34666108 - 34666143
Alignment:
Q  141 aagcatttagtgttggaaacaaaagagtagaatttg 176  Q
    ||||||||||||||||||||||||||||||||||||    
T  34666108 aagcatttagtgttggaaacaaaagagtagaatttg 34666143  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 321
Target Start/End: Complemental strand, 19648900 - 19648822
Alignment:
Q  243 tcactgcacattttcaaggtgcagatattaagttgcattctattagcacctttgttcaagttgccgatggggttgtttg 321  Q
    |||||||||||||| |||||||||||||||||||| |  | ||||| ||||||| ||| ||||| ||||| || |||||    
T  19648900 tcactgcacattttaaaggtgcagatattaagttgaacccaattagtacctttgctcatgttgctgatggtgtggtttg 19648822  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 19649131 - 19649094
Alignment:
Q  141 aagcatttagtgttggaaacaaaagagtagaatttgaa 178  Q
    |||||||||||||||||||||||||| |||||||||||    
T  19649131 aagcatttagtgttggaaacaaaagaatagaatttgaa 19649094  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 299
Target Start/End: Original strand, 34646625 - 34646707
Alignment:
Q  220 atcaaatgaaaatgattttccttt---cactgcacattttcaaggtgcagatattaagttgcattctattagcacctttgttc 299  Q
    |||||||||| ||||||||||| |   ||| | ||||||| ||||||| ||| || |||||||||||||||| ||||||||||    
T  34646625 atcaaatgaatatgattttcctataatcaccgtacattttaaaggtgccgatgttgagttgcattctattagtacctttgttc 34646707  T

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Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 355 - 445
Target Start/End: Original strand, 14192654 - 14192744
Alignment:
Q  355 catctttgggaatttggctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtaccaaa 445  Q
    ||||||||| ||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||| ||||| |||| |||||||||||||    
T  14192654 catctttggaaatttggctcagcaaaatttgatggttggttatgatcttcagcaaaaaattgtgtcctttaaacctagtgattgtaccaaa 14192744  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 243 - 459
Target Start/End: Original strand, 14201545 - 14201755
Alignment:
Q  243 tcactgcacattttcaaggtgcagatattaagttgcattctattagcacctttgttcaagttgccgatggggttgtttgtttggctcttgtcccatctcg 342  Q
    |||||||||||||| |||||||||||||||| ||| ||| |||||| |||||| || ||||| | |||||| |||  || |||||| || |||||||||     
T  14201545 tcactgcacattttaaaggtgcagatattaaattgtattatattagtacctttattaaagtttctgatgggattgcatgcttggcttttatcccatctca 14201644  T
Q  343 aatcaataaagtcatctttgggaatttggctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtacc 442  Q
    ||       || ||||||||| ||  |||||||||| |||||||||||||||||| |||||   ||||| | |||  | ||||||||| |||||||||||    
T  14201645 aac------agccatctttggaaacgtggctcaacagaatttgttggttggttataatcttgttcaaaatactgttacatttaagcctgttgattgtacc 14201738  T
Q  443 aaaccatattgagtgta 459  Q
    || ||||||||| ||||    
T  14201739 aagccatattgaatgta 14201755  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 371 - 481
Target Start/End: Original strand, 14183738 - 14183851
Alignment:
Q  371 gctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtaccaaaccatattgag---tgtagactttgt 467  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||   || || |   ||||||||||||    
T  14183738 gctcagcagaatttgttggttggttatgatcttcaacaaaaaattgtgtcgtttaagcctactgattgtagcaaagtgtaatgggtgttgtagactttgt 14183837  T
Q  468 ttactttactcctt 481  Q
    ||||||| ||||||    
T  14183838 ttactttcctcctt 14183851  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 371 - 445
Target Start/End: Original strand, 40718477 - 40718551
Alignment:
Q  371 gctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtaccaaa 445  Q
    |||||||| |||||||||||||||||||| ||| ||||||||| |||||| |||||||||| |||||||| ||||    
T  40718477 gctcaacagaatttgttggttggttatgaccttaaacaaaaaactgtgtcatttaagcctactgattgtagcaaa 40718551  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 176
Target Start/End: Original strand, 40718111 - 40718153
Alignment:
Q  134 acattgaaagcatttagtgttggaaacaaaagagtagaatttg 176  Q
    |||||| |||||||||||||||||||||||||| |||||||||    
T  40718111 acattggaagcatttagtgttggaaacaaaagaatagaatttg 40718153  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 14183354 - 14183398
Alignment:
Q  134 acattgaaagcatttagtgttggaaacaaaagagtagaatttgaa 178  Q
    |||||| |||||||||||||||| ||||||||| |||||||||||    
T  14183354 acattggaagcatttagtgttggtaacaaaagaatagaatttgaa 14183398  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 322
Target Start/End: Original strand, 14183601 - 14183674
Alignment:
Q  249 cacattttcaaggtgcagatattaagttgcattctattagcacctttgttcaagttgccgatggggttgtttgt 322  Q
    |||||||| ||||||| ||| ||||||||||| ||||||| || |||||| | ||||| |||||  ||||||||    
T  14183601 cacattttaaaggtgcggatgttaagttgcatcctattagtacatttgttgatgttgcagatggcattgtttgt 14183674  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 311
Target Start/End: Original strand, 40718360 - 40718420
Alignment:
Q  251 cattttcaaggtgcagatattaagttgcattctattagcacctttgttcaagttgccgatg 311  Q
    |||||| ||||||| ||||||||||||||| | ||||| |||||||||   ||||||||||    
T  40718360 cattttaaaggtgcggatattaagttgcatcccattagtacctttgtttccgttgccgatg 40718420  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 372 - 442
Target Start/End: Original strand, 34303447 - 34303517
Alignment:
Q  372 ctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtacc 442  Q
    |||||||| ||||  ||||||||||||| ||||||||||||| ||||||||||||| || | |||||||||    
T  34303447 ctcaacaagatttcatggttggttatgaccttcaacaaaaaactgtgtcttttaagtctgtagattgtacc 34303517  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 444
Target Start/End: Complemental strand, 33888914 - 33888832
Alignment:
Q  362 gggaatttggctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtaccaa 444  Q
    ||||| ||||| ||||| || ||||| ||||||||||| || ||| |||| ||| | |||||||||||||||||||| |||||    
T  33888914 gggaacttggcacaacataacttgttagttggttatgacctacaaaaaaatattatctcttttaagcctattgattgcaccaa 33888832  T

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