View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5749-Insertion-5 (Length: 510)
Name: NF5749-Insertion-5
Description: NF5749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5749-Insertion-5 |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 7 - 510
Target Start/End: Original strand, 44137001 - 44137507
Alignment:
| Q |
7 |
agtatcctctccacaatcttacgtccttacaaaaatgtatcctctcatgtgtgaactttggttgttaattatgtcatttcatcacacaacaaaacttaag |
106 |
Q |
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| T |
44137001 |
agtatcctctccacaatcttacgtcctttcaaaaatgtatcctctcatgtgtgaactttggttgttaattatgtcatttcatcacacaacaaaacttaag |
44137100 |
T |
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| Q |
107 |
ggtcacaataactcgtctaaatcctctatctagtctcaactctcaacgtttgtggataaagattgatctttggt---aaatgactgtaatataaggacac |
203 |
Q |
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| T |
44137101 |
ggtcacaataacttgtctaaatcctctatctagtctcaactctcaacgtttgtggataaagattgatctttggttgaaaatgactgtaatataagaacgc |
44137200 |
T |
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| Q |
204 |
atgtataactttgctttaaagtgaccgcatataattaaggatccaagtcaagattaaacttgattacacccaaattcgattagtagaggttgtgctacat |
303 |
Q |
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| T |
44137201 |
atgtataactttgctttaaagtgaccgcatataattaaggatccaagtcaagattaaacttgattacacccaaattcgattagtagaggttgtgctacat |
44137300 |
T |
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| Q |
304 |
cattatcttctcataataagaaagagaaaaagacaaggcaatggtttggatatgttgggtattttggacgttaccttgccatgtaatttcaaacatttat |
403 |
Q |
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| T |
44137301 |
cattatcttctcataataagaaagagaaaaagacaaggcaatggtttggatatgttgggtattttggacgttaccttgccatgtaatttcaaacatttat |
44137400 |
T |
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| Q |
404 |
ttttaaggggtttaatttcaaacatgattattatagtcataataaaacgattttagtggtttaagcaggttcaaaactagctttttaggattgatagttt |
503 |
Q |
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| T |
44137401 |
ttttaaggggtttaatttcaaacatgattattatagtcataataaaacgattttagtggtttaagcaggttcaaaactagctttttaggattgatagttt |
44137500 |
T |
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| Q |
504 |
acttttg |
510 |
Q |
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| T |
44137501 |
acttttg |
44137507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 29 - 510
Target Start/End: Original strand, 50057254 - 50057738
Alignment:
| Q |
29 |
gtccttacaaaaatgtatcctctcatgtgtgaactttggttgttaattatgtcatttcatcacacaacaaaacttaagggtcacaataactcgtctaaat |
128 |
Q |
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| T |
50057254 |
gtcctttcaaaaatatatcctctcatgtttgaactttggttgttaattatgtcatttcatcacacaacaaaactgaagggtcgcaataactcgtctaaat |
50057353 |
T |
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| Q |
129 |
cctctatctagtctcaactctcaacgtttgtggataaagattgatctttggt---aaatgactgtaatataaggacacatgtataactttgctttaaagt |
225 |
Q |
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| T |
50057354 |
tctctgtctagtcttaactctcaacgtttgtggataaatattgatctttggttgaaagtgactgtaatataaggacacatatataactttgcgttaaagt |
50057453 |
T |
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| Q |
226 |
gaccgcatataattaaggatccaagtcaagattaaacttgattacacccaaattcgattagtagaggttgtgc-tacatcattatcttctcataataaga |
324 |
Q |
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| T |
50057454 |
gaccgcatataattaaggatccaagtcaacaataaacttgattacacccaaattcgattagtagaggttgtgcatacatcattctcatctcataataaga |
50057553 |
T |
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| Q |
325 |
aagagaaaaagacaaggcaatggtttggatatgttgggtattttggacgttaccttgccatgtaatttcaaacatttatttttaaggggtttaatttcaa |
424 |
Q |
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||| ||||| |||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
50057554 |
aagcgaaaa-gacaagccaatggtttggatatgttaggtattttggactttaccttgccatgtaatttcaaacatttacttttaaggggtttaatttcaa |
50057652 |
T |
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| Q |
425 |
acatgattattatagtcataataaaacgattttagtggtttaagcaggttcaaaactagctttttaggattgatagtttacttttg |
510 |
Q |
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| T |
50057653 |
acatgattattatattcataataaaacgattttaatggcttaagcaggtttaaaactagcttttcagggttgatagtttacttttg |
50057738 |
T |
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