View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5749-Insertion-6 (Length: 443)

Name: NF5749-Insertion-6
Description: NF5749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5749-Insertion-6
NF5749-Insertion-6
[»] chr3 (1 HSPs)
chr3 (6-443)||(49623257-49623694)


Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 6 - 443
Target Start/End: Original strand, 49623257 - 49623694
Alignment:
Q  6 caggggcccggaatggaactttaagctatttatccatttttgtgtgataaatatgttggaaaaatatgagattaaaggattgaaacattttatctcnnnn 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||        
T  49623257 caggggcccggaatggaactttaagctatttatccatttttgtgtgataaatatgttggaaaaatatgagattaaagggttgaaacattttatctcaaaa 49623356  T
Q  106 nnnnnnnn--ctgagcattttttaccaaacaaacttgaacatcacaaattaacactttaaataactcttccaaaaaattagtgatatgtnnnnnnnggag 203  Q
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |       
T  49623357 aaaaaaaaaactgagcattttttaccaaacaaacttgaacatcacaaattaacactttaaataactcttccaaaaaattagtgatatgtaaaaaaaga-- 49623454  T
Q  204 ggcaaactactacaaaaactaacatgagaacattatatttgccaacaacaacaaaacaaagaaggtaacaacatataataacaccgggtcgtacttagat 303  Q
    ||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  49623455 ggcaaactactacaaaaactagcatgagaacatcgtatttgccaacaacaacaaaacaaagaaggtaacaacatataataacaccgggtcgtacttaaat 49623554  T
Q  304 gaaaatgttcagtttatcagtattggcattgtcaattgagttaaacctttctgaccactattgatttattattttattcaaaattgcaacagaaatggtc 403  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  49623555 gaaaatgttcagtttattaatattggcattgtcaattgagttaaacctttctgaccacggttgatttattattttattcaaaattgcaacagaaatggtc 49623654  T
Q  404 caaatcatgataacttgataaccaataatgccacactaca 443  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  49623655 caaatcatgataacttgataaccaataatgccacactaca 49623694  T

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