View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5749-Insertion-7 (Length: 316)

Name: NF5749-Insertion-7
Description: NF5749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5749-Insertion-7
NF5749-Insertion-7
[»] chr8 (2 HSPs)
chr8 (76-312)||(39047422-39047659)
chr8 (13-50)||(35161494-35161531)
[»] chr1 (3 HSPs)
chr1 (13-49)||(7015062-7015098)
chr1 (15-50)||(1181573-1181608)
chr1 (13-50)||(12068056-12068093)
[»] chr4 (6 HSPs)
chr4 (14-49)||(12657273-12657308)
chr4 (11-41)||(22923393-22923423)
chr4 (11-41)||(22928046-22928076)
chr4 (11-41)||(22984325-22984355)
chr4 (11-41)||(22997913-22997943)
chr4 (13-49)||(1939442-1939478)
[»] chr5 (2 HSPs)
chr5 (16-50)||(35048688-35048722)
chr5 (13-49)||(12143809-12143845)
[»] chr2 (1 HSPs)
chr2 (13-50)||(19380296-19380333)


Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 76 - 312
Target Start/End: Original strand, 39047422 - 39047659
Alignment:
Q  76 ctttctcaatagtgaaaagcac--catagagtgatcttttggaagtccacacctatgatgtccctccatggcccaaaaagtttgtaaattcacttccatg 173  Q
    ||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39047422 ctttctcaatagtgaaaagcacaccatacagtgatcttttggaagtccacacctatgatgtccctccatggcccaaaaagtttgtaaattcacttccatg 39047521  T
Q  174 aaccgactttccacccttttcacaatagatgcaccattaaagcgcgcttccacggaaacgccatagtttgaactcatccaaggttaatttggtattagac 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39047522 aaccgactttccacccttttcacaatagatgcaccattaaagcgcgcttccacggaaacgccatagtttgaactcatcccaggttaatttggtattagac 39047621  T
Q  274 cactctacatccacctttaccaatgaattccataccttt 312  Q
    ||||| ||||||||| |||||||||||||||||||||||    
T  39047622 cactccacatccacc-ttaccaatgaattccataccttt 39047659  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 35161531 - 35161494
Alignment:
Q  13 ggcgcgagcaaaatgtgctgggtggagagtagaattct 50  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  35161531 ggcgcgagcaaaatgtgcagggtgaagagtagaattct 35161494  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 7015062 - 7015098
Alignment:
Q  13 ggcgcgagcaaaatgtgctgggtggagagtagaattc 49  Q
    ||||||||||||||||||||||||||||| |||||||    
T  7015062 ggcgcgagcaaaatgtgctgggtggagagcagaattc 7015098  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 1181573 - 1181608
Alignment:
Q  15 cgcgagcaaaatgtgctgggtggagagtagaattct 50  Q
    ||||||||||||||||||||||||||| ||||||||    
T  1181573 cgcgagcaaaatgtgctgggtggagagcagaattct 1181608  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 12068056 - 12068093
Alignment:
Q  13 ggcgcgagcaaaatgtgctgggtggagagtagaattct 50  Q
    ||||||||||||||||||||||||||||| | ||||||    
T  12068056 ggcgcgagcaaaatgtgctgggtggagagcataattct 12068093  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 12657273 - 12657308
Alignment:
Q  14 gcgcgagcaaaatgtgctgggtggagagtagaattc 49  Q
    |||||||||||||||||||||||||||| |||||||    
T  12657273 gcgcgagcaaaatgtgctgggtggagagcagaattc 12657308  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 41
Target Start/End: Original strand, 22923393 - 22923423
Alignment:
Q  11 aaggcgcgagcaaaatgtgctgggtggagag 41  Q
    |||||||||||||||||||||||||||||||    
T  22923393 aaggcgcgagcaaaatgtgctgggtggagag 22923423  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 41
Target Start/End: Original strand, 22928046 - 22928076
Alignment:
Q  11 aaggcgcgagcaaaatgtgctgggtggagag 41  Q
    |||||||||||||||||||||||||||||||    
T  22928046 aaggcgcgagcaaaatgtgctgggtggagag 22928076  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 41
Target Start/End: Original strand, 22984325 - 22984355
Alignment:
Q  11 aaggcgcgagcaaaatgtgctgggtggagag 41  Q
    |||||||||||||||||||||||||||||||    
T  22984325 aaggcgcgagcaaaatgtgctgggtggagag 22984355  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 41
Target Start/End: Original strand, 22997913 - 22997943
Alignment:
Q  11 aaggcgcgagcaaaatgtgctgggtggagag 41  Q
    |||||||||||||||||||||||||||||||    
T  22997913 aaggcgcgagcaaaatgtgctgggtggagag 22997943  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 1939442 - 1939478
Alignment:
Q  13 ggcgcgagcaaaatgtgctgggtggagagtagaattc 49  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  1939442 ggcgcgagcaaaatgtgctgggtagagagcagaattc 1939478  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 35048722 - 35048688
Alignment:
Q  16 gcgagcaaaatgtgctgggtggagagtagaattct 50  Q
    |||||||||||||||||||||||||| ||||||||    
T  35048722 gcgagcaaaatgtgctgggtggagagcagaattct 35048688  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 12143845 - 12143809
Alignment:
Q  13 ggcgcgagcaaaatgtgctgggtggagagtagaattc 49  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  12143845 ggcgcgagcaaaatgtgctaggtggagagcagaattc 12143809  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 19380296 - 19380333
Alignment:
Q  13 ggcgcgagcaaaatgtgctgggtggagagtagaattct 50  Q
    ||||||||||||||||||||||||||||| | ||||||    
T  19380296 ggcgcgagcaaaatgtgctgggtggagagcaaaattct 19380333  T

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