View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5749-Insertion-9 (Length: 322)
Name: NF5749-Insertion-9
Description: NF5749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5749-Insertion-9 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 8 - 322
Target Start/End: Complemental strand, 35364146 - 35363832
Alignment:
| Q |
8 |
ctttcccccgagaaaatccacccagccattttcccgagaaaatcaccaacacagcacaagaacaacaacaatcaatcgatgatctacttaccgtgattcc |
107 |
Q |
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| T |
35364146 |
ctttcccccgagaaaatccacccagccattttcccgagaaaatcaccaacacagcacaagaacaacaacaatcaatcgatgatctacttaccgtgattcc |
35364047 |
T |
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| Q |
108 |
actcgaggacgaagacgatgatgaggtcgacccctcatggaacaaaatctaaatctcacattgctcacaacttccactgatccagatgatgttcgactga |
207 |
Q |
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| T |
35364046 |
actcgaggacgaagacgatgatgaggtcgacccctcatggaacaaaatctaaatctcacattgctcacaacttccactgatccagatgatgttcgactga |
35363947 |
T |
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| Q |
208 |
ttgagtgggaagattttgagcatgatcttgctaggttatcgagtctctcttctgctcttaaccaaaccaaggagaagaaacgaaaccttcagcacaaact |
307 |
Q |
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| T |
35363946 |
ttgagtgggaagattttgagcatgatcttgctaggttatcgagtctctcttctgctctcaatcaagctaaggagaagaaacgaaaccttcagcataaact |
35363847 |
T |
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| Q |
308 |
cgagtctctcatcca |
322 |
Q |
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| T |
35363846 |
cgagtctctcatcca |
35363832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 35364815 - 35364756
Alignment:
| Q |
33 |
ccattttcccgagaaaatcaccaacacagcacaagaacaacaacaatcaatcgatgatct |
92 |
Q |
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|||| |||| |||||||||| ||||||| |||||||||||||| ||||||| |||||||| |
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| T |
35364815 |
ccatattcctgagaaaatcatcaacacaccacaagaacaacaagaatcaattgatgatct |
35364756 |
T |
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