View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5749_high_1 (Length: 909)
Name: NF5749_high_1
Description: NF5749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5749_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 826; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 826; E-Value: 0
Query Start/End: Original strand, 16 - 881
Target Start/End: Complemental strand, 45142369 - 45141504
Alignment:
| Q |
16 |
acacaaaataaaagattacagaaagtaaagatgaaaacacgatgtttggatcaatttgaatcctacatcctcactgaggtcgatctcatcactatgatca |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45142369 |
acacaaaataaaagattacagaaagtaaagatgaaaacacgatgtttggatcaatttgaatcctacatcctcactgaggtcgatctcatcactatgatca |
45142270 |
T |
|
| Q |
116 |
agaattacaaggctttcctttctaatagtaggaacgcattccaaatttacaacaaacttagaaacagaatgtaggatatttatcacattccaaattggac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45142269 |
agaattacaaggctttcctttctaatagtaggaacgcattccaaatttacaacaaacttagaaacagaatgtaggatatttatcacattccaaattggac |
45142170 |
T |
|
| Q |
216 |
cgcttattttttaatagtagtaggaacacaactattaataacagagaagcctccatcgaccaccaaattgtgtccactaatataagccgattcttccgat |
315 |
Q |
| |
|
| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45142169 |
cacttattttttaatagtagtaggcacacaactattaataacagaaaagcctccatcgaccaccaaattgtgtccactaatataagccgattcttccgat |
45142070 |
T |
|
| Q |
316 |
gcaagaaagagagcagcttctgcaatatgcgtagcctttagtgtaattcctttcaaattagcagaatctttcatattagcttcaacttcactcatctcca |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
45142069 |
gcaagaaagagagcagcttctgcaatatgcgtagcctttagtgtaattcctttcaaattagcagaatctttcatattagcttcaactttactcatctcca |
45141970 |
T |
|
| Q |
416 |
tattcagtgctctacatgcaagaggcgtggcaacaccattcggtgagattgaattgactctaattccgtaagctccaagctcaccgcacgttgaacgtac |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
45141969 |
tattcagtgctctacatgcaagaggcgtggcaacaccatacggtgagattgaattgactctaattccgtaagctccaagctcaccacacgttgaacgtac |
45141870 |
T |
|
| Q |
516 |
aagtcctaagagaccatgtttggacgaaacataatcatggccacgataaccagcaacagaggcagctacactggcagtacaaattatggatccacggatt |
615 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45141869 |
aagtcctaagagaccatgtttggatgtaacataatcatggccacgatttccagcaacagaggcagctacactggcagtacaaattatggatccacggatt |
45141770 |
T |
|
| Q |
616 |
tttctctccaccatgaaacgtgcagcgtgcttgatagctgcgagtgatccacgaacattaatggccatggtgttgtcaaattcattcagatcaaattcta |
715 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45141769 |
tttctctccaccatgaaacgtgcagcgtgcttgatagctgcgagtgatccacgaacattaatggccatggtgttgtcaaattcattcagatcaaattcta |
45141670 |
T |
|
| Q |
716 |
gtatgctgctagacataccaccttcaattccagcgttgctaaacataatgtctagggttccatatttttccaatgcgaaagctactgtttcttcaacttg |
815 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45141669 |
gtatgctgctagacataccaccttcaattccagcgttgctaaacataatgtctagggttccatatttttccaatgcgaaagctactgtttcttcaacttg |
45141570 |
T |
|
| Q |
816 |
tttttcatctctcacatcacaatggtggtaactcactttgtctaacccaattgaagttgcaacttg |
881 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45141569 |
tttttcatctctcacatcacaatggtggtaactcactttgtctaacccaattgaagttgcaacttg |
45141504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 256 - 881
Target Start/End: Complemental strand, 45152774 - 45152147
Alignment:
| Q |
256 |
acagagaagcctccatcgaccaccaaattgtgtccactaatataagccgattcttccgatgcaagaaagagagcagcttctgcaatatgcgtagccttta |
355 |
Q |
| |
|
|||| ||||||||||||||||||||| || ||||||||||||||||||||||| || || |||||||| | |||||||||||||||||| |||||||| |
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|
| T |
45152774 |
acagtgaagcctccatcgaccaccaagttttgtccactaatataagccgattcatcggaagcaagaaacatagcagcttctgcaatatgaccagccttta |
45152675 |
T |
|
| Q |
356 |
gtgtaattcctttcaaattagcagaatctttcatattagcttcaacttcactcatctccatattcagtgctctacatgcaagaggcgtggcaacaccatt |
455 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| | |||||||||||||||||| ||| | ||||||||||||||| |||||| |||||||||||| |
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|
| T |
45152674 |
gtgtaattcctttcaaattagcagaatcattcccaatagcttcaacttcactcacatccttgttcagtgctctacataaaagaggtgtggcaacaccaga |
45152575 |
T |
|
| Q |
456 |
cggtgagattgaattgactctaattccgtaagctccaagctcaccgcacgttgaacgtacaagtcctaagagaccatgtttggacgaaacataatcatgg |
555 |
Q |
| |
|
||||| |||||||| ||||| ||||| |||||||||||||||| ||||||||| || ||||| |||| |||||||||||||| | ||||||||| |
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|
| T |
45152574 |
aggtgaaattgaattaactcttattccataagctccaagctcactgcacgttgagcgaacaaggcctataagaccatgtttggatgttgtataatcatgt |
45152475 |
T |
|
| Q |
556 |
ccacgataaccagcaacagaggcagctacactggcagtacaaattatggatccacggatttttctctccaccatgaaacgtgcagcgtgcttgatagctg |
655 |
Q |
| |
|
|| | | ||||||||| || |||| ||||| || || ||||||||||||||||| |||||||| |||||||| | ||| |||||||||||||||| || |
|
|
| T |
45152474 |
cctgcacatccagcaacaaagccagccacactagccgtgcaaattatggatccacgaatttttctttccaccataacacgcgcagcgtgcttgatagttg |
45152375 |
T |
|
| Q |
656 |
cgagtgatccacgaacattaatggccatggtgttgtcaaattcattcagatcaaattctagtatgctgctagaca------taccaccttcaattccagc |
749 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||| |||||| || ||||| |||||||||| |
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|
| T |
45152374 |
tagctgatccacgaacattaatggccatggtgttgtcaaattcatttacatca----ttagtatgctgatagacatagcagtagcacctccaattccagc |
45152279 |
T |
|
| Q |
750 |
gttgctaaacataatgtctagggttccatatttttccaatgcgaaagctactgtttcttcaacttgtttttcatctctcacatcacaatggtggtaactc |
849 |
Q |
| |
|
||||| ||||| ||||||| ||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45152278 |
attgctgaacatgatgtctaaggttccatatttttccaatgcaaaagctacggtttcctcaacttgtttttcatcactcacatcacaatggtggtaactc |
45152179 |
T |
|
| Q |
850 |
actttgtctaacccaattgaagttgcaacttg |
881 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
45152178 |
actttgtctaacccaattgaagttgcaacttg |
45152147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 158; Significance: 1e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 250 - 877
Target Start/End: Complemental strand, 38256599 - 38255975
Alignment:
| Q |
250 |
ttaataacagagaagcctccatcgaccaccaaattgtgtccactaatataagccgattcttccgatgcaagaaagagagcagcttctgcaatatgcgtag |
349 |
Q |
| |
|
||||| || |||||||||||||| || ||||| |||||||||||||||||||| ||||| || ||||||||||| | ||||| ||||||||||| | || |
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|
| T |
38256599 |
ttaatgactgagaagcctccatcaacgaccaagttgtgtccactaatataagcagattcatcagatgcaagaaacaaagcagtctctgcaatatgagcag |
38256500 |
T |
|
| Q |
350 |
cctttagtgtaattcctttcaaattagcagaatctttcatattagcttcaacttcactcatctccatattcagtgctctacatgcaagaggcgtggcaac |
449 |
Q |
| |
|
|||| | ||||||||| | |||||||||| |||| | |||||||||||||||| | |||| | ||||||||||||||||||||| || ||||| |
|
|
| T |
38256499 |
ccttcaatgtaattccctgcaaattagcataatcaaggccaacagcttcaacttcactcggcaccatgtccagtgctctacatgcaagaggtgtagcaac |
38256400 |
T |
|
| Q |
450 |
accattcggtgagattgaattgactctaattccgtaagctccaagctcaccgcacgttgaacgtacaagtcctaagagaccatgtttggacgaaacataa |
549 |
Q |
| |
|
| ||| |||||||||||||||||||| ||||| |||||||||||||||||||| | ||| | ||||| |||| ||||||||||| || | |||| |
|
|
| T |
38256399 |
agcatagggtgagattgaattgactctgattccataagctccaagctcaccgcatgctgacctaacaaggcctataagaccatgttttgatgctgtataa |
38256300 |
T |
|
| Q |
550 |
tcatggccacgataaccagcaacagaggcagctacactggcagtacaaattatggatccacggatttttctctccaccatgaaacgtgcagcgtgcttga |
649 |
Q |
| |
|
||||| || | | | | ||||| | ||||||||||||| || |||||||| ||||| || |||||||| |||||||| | ||||| ||| ||||||| |
|
|
| T |
38256299 |
tcatgtcctgcacatctaccaacaaaaccagctacactggctgtgcaaattattgatcctcgtatttttctttccaccattacacgtgaagcatgcttga |
38256200 |
T |
|
| Q |
650 |
tagctgcgagtgatccacgaacattaatggccatggtgttgtcaaattcattcagatcaaattctagtatgctgctagacataccaccttcaattccagc |
749 |
Q |
| |
|
||| ||| || ||||||| || | ||||||||||||||||||||||| || | ||||||||||||||| ||| | | ||| | | ||||| |
|
|
| T |
38256199 |
tagttgcagctgcaccacgaatgttcacagccatggtgttgtcaaattcatttaggttaaattctagtatgct---agataaaggaccagcgttaccagc |
38256103 |
T |
|
| Q |
750 |
gttgctaaacataatgtctagggttccatatttttccaatgcgaaagctactgtttcttcaacttgtttttcatctctcacatcacaatggtggtaactc |
849 |
Q |
| |
|
||||| ||||| ||||||| ||| |||||| | ||||| | |||||| || |||| ||||||||||| || |||||||| ||||| |||||||||||| |
|
|
| T |
38256102 |
attgctgaacatgatgtctaaggtaccatatctctccaacgtgaaagcaacaatttcctcaacttgtttctcctctctcacgtcacagtggtggtaactc |
38256003 |
T |
|
| Q |
850 |
actttgtctaacccaattgaagttgcaa |
877 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
38256002 |
actttgtctaacccaattgaagttgcaa |
38255975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 34530943 - 34530995
Alignment:
| Q |
55 |
cgatgtttggatcaa-tttgaatcctacatcctcactgaggtcgatctcatca |
106 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34530943 |
cgatatttggatcaactttgaatcctacatcctcgttgaggtcgatctcatca |
34530995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 256 - 353
Target Start/End: Original strand, 12700681 - 12700778
Alignment:
| Q |
256 |
acagagaagcctccatcgaccaccaaattgtgtccactaatataagccgattcttccgatgcaagaaagagagcagcttctgcaatatgcgtagcctt |
353 |
Q |
| |
|
|||||||| || ||||| || |||||||| || |||||||| ||| | | ||| || || |||||||| | ||| ||||||||||||||| ||||||| |
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|
| T |
12700681 |
acagagaaaccaccatcaactaccaaattatgaccactaatgtaaacagcttcatcagaagcaagaaacaaagctgcttctgcaatatgcttagcctt |
12700778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 117
Target Start/End: Original strand, 29361452 - 29361487
Alignment:
| Q |
82 |
atcctcactgaggtcgatctcatcactatgatcaag |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29361452 |
atcctcactgaggtcgatcccatcactatgatcaag |
29361487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 117
Target Start/End: Complemental strand, 30270658 - 30270623
Alignment:
| Q |
82 |
atcctcactgaggtcgatctcatcactatgatcaag |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30270658 |
atcctcactgaggtcgatcccatcactatgatcaag |
30270623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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