View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5749_high_12 (Length: 368)
Name: NF5749_high_12
Description: NF5749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5749_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 11 - 352
Target Start/End: Complemental strand, 39856113 - 39855761
Alignment:
| Q |
11 |
cacagaccaccaaacacaactcaagtctcttgacattcagattgctgatatcaaagccaagcttgaaaaactacaaggcgaccgggctaaaatagctgag |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39856113 |
cacagaccaccaaacacaactcaagtctcttgacattcggattgctgatatcaaagccaagcttgaaaaactacaaggcgaccgggctaaaatggctgag |
39856014 |
T |
|
| Q |
111 |
attcaagatcaagagaaagataagatcacatcttttaacaatgaagttaaatcaattttccatcgcctcgctgatgatcaaatcaagttgaagagcgttg |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39856013 |
attcaagatcaagagaaagataagatcacatcttttaacaatgaagttaaatcaattttccatcgcctcgctgatgatcaaatcaagttgaagagcgttg |
39855914 |
T |
|
| Q |
211 |
aagataaaatcctggaggcacaaactgaattggaaaggcatgagaaggtctaccaaataatgagggtaa-----------tgattaatgtacttacttgg |
299 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39855913 |
aagataaaatcctggaggcacaaactgaattggaaaggcatgagaaggtctaccaaataatgagggtaatgcctccattttgattaatgtacttacttgg |
39855814 |
T |
|
| Q |
300 |
cctttttggtcacaaacatttcacttcgatgccattttagcctaccttcattc |
352 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39855813 |
cctttttggtcacaaacgtttcacttcgatgccattttagcctaccttcattc |
39855761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 11 - 263
Target Start/End: Complemental strand, 39863312 - 39863060
Alignment:
| Q |
11 |
cacagaccaccaaacacaactcaagtctcttgacattcagattgctgatatcaaagccaagcttgaaaaactacaaggcgaccgggctaaaatagctgag |
110 |
Q |
| |
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|||| |||| |||||||||| ||| |||||||| ||| ||||||||| | |||||||||||||||||||||||||| ||| | || ||||| | |||| |
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| T |
39863312 |
cacaaaccatcaaacacaacgcaactctcttgatgctcaaattgctgatcttaaagccaagcttgaaaaactacaaggtgacagagccaaaattgatgag |
39863213 |
T |
|
| Q |
111 |
attcaagatcaagagaaagataagatcacatcttttaacaatgaagttaaatcaattttccatcgcctcgctgatgatcaaatcaagttgaagagcgttg |
210 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||| ||||| || |||| |
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| T |
39863212 |
attgaagatcaagagaaagataagatcacatcttttaacaaagaagttaaatcaattttccatcgccttgctaatgatcaaatcaaattgaaaagtgttg |
39863113 |
T |
|
| Q |
211 |
aagataaaatcctggaggcacaaactgaattggaaaggcatgagaaggtctac |
263 |
Q |
| |
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|||||||||||| |||||| ||||||||||||||||| ||||||||||||||| |
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| T |
39863112 |
aagataaaatcccggaggcgcaaactgaattggaaagtcatgagaaggtctac |
39863060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 17 - 352
Target Start/End: Complemental strand, 39846389 - 39846045
Alignment:
| Q |
17 |
ccaccaaacacaactcaagtctcttgacattcagattgctgatatcaaagccaagcttgaaaaactacaaggcgaccgggctaaaatagctgagattcaa |
116 |
Q |
| |
|
|||||||||| ||||||| |||||||| | ||||||||||||| | ||||||| |||||||||||||||||| || | || ||||| | ||||||| || |
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| T |
39846389 |
ccaccaaacagaactcaactctcttgatactcagattgctgatcttaaagccatgcttgaaaaactacaaggggaaagagccaaaattgttgagattgaa |
39846290 |
T |
|
| Q |
117 |
gatcaagagaaagataagatcacatcttttaacaatgaagttaaatcaattttccatcgcctcgctgatgatcaaatcaagttgaagagcgttgaagata |
216 |
Q |
| |
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| ||||||||||| ||||||||| ||| ||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||| | ||| ||| |
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| T |
39846289 |
gctcaagagaaagctaagatcacgtctcttaacaaagaagttaaatcaattttccatcgcctcgctattgatcaagtcaagttgaaaa---ttgctgatc |
39846193 |
T |
|
| Q |
217 |
aaatcctggaggcacaaactgaattggaaaggcatgagaaggtctaccaaataatgagggtaa-----------tgattaatgtacttacttggcctttt |
305 |
Q |
| |
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|||| | |||||| |||||||||||||| | ||||||||||||||| ||| |||||| || ||||| ||||| || ||||||| ||| |
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| T |
39846192 |
aaattccggaggccgaaactgaattggaaggtcatgagaaggtctacaaaaccttgagggcaatccctccattttgattcatgtatttgcttggccgttt |
39846093 |
T |
|
| Q |
306 |
tgg-tcacaaacatttcacttcgatgccattttagcctaccttcattc |
352 |
Q |
| |
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||| |||||||||||| |||||||||||| |||||| |||| |||||| |
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|
| T |
39846092 |
tggctcacaaacattttacttcgatgccactttagcttaccatcattc |
39846045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 66 - 215
Target Start/End: Original strand, 38980887 - 38981036
Alignment:
| Q |
66 |
gccaagcttgaaaaactacaaggcgaccgggctaaaatagctgagattcaagatcaagagaaagataagatcacatcttttaacaatgaagttaaatcaa |
165 |
Q |
| |
|
|||||||||||||||||||||| || |||| ||| | ||||| ||||||| ||||||||||||||||| ||||||| ||||| ||||||||||||| |
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| T |
38980887 |
gccaagcttgaaaaactacaagttgagagggccaaagttactgagggtcaagataaagagaaagataagatcgcatctttaaacaaagaagttaaatcaa |
38980986 |
T |
|
| Q |
166 |
ttttccatcgcctcgctgatgatcaaatcaagttgaagagcgttgaagat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| || ||||||||| |
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| T |
38980987 |
ttttccatcgcctcgctgatgatcaaatcaaattgaaaagtgttgaagat |
38981036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 47 - 220
Target Start/End: Complemental strand, 39910092 - 39909924
Alignment:
| Q |
47 |
tcagattgctgatatcaaagccaagcttgaaaaactacaaggcgaccgggctaaaatagctgagattcaagatcaagagaaagataagatcacatctttt |
146 |
Q |
| |
|
||||||||||||| | || ||||||||||||||||||||||| ||| | || | | |||||||||||||||||||||||| |||| ||||||| |
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| T |
39910092 |
tcagattgctgatcttaatgccaagcttgaaaaactacaaggtgaca-----atcatcgttaagattcaagatcaagagaaagataggatcgcatctttg |
39909998 |
T |
|
| Q |
147 |
aacaatgaagttaaatcaattttccatcgcctcgctgatgatcaaatcaagttgaagagcgttgaagataaaat |
220 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||||||| ||| | || ||||||||| |||| |
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| T |
39909997 |
aacaaagaagttaaatcaattttccatcgcctctctgatgatcaaatcaaattggaaagtgttgaagatcaaat |
39909924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 77 - 202
Target Start/End: Original strand, 39738028 - 39738153
Alignment:
| Q |
77 |
aaaactacaaggcgaccgggctaaaatagctgagattcaagatcaagagaaagataagatcacatcttttaacaatgaagttaaatcaattttccatcgc |
176 |
Q |
| |
|
||||||||||| ||| |||| ||||| |||||||||||||||||||||||||||||||| |||||||| || || || ||||| ||||||||||| | | |
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|
| T |
39738028 |
aaaactacaagaagacagggccaaaattgctgagattcaagatcaagagaaagataagattacatctttgaataaagatgttaagtcaattttccagcac |
39738127 |
T |
|
| Q |
177 |
ctcgctgatgatcaaatcaagttgaa |
202 |
Q |
| |
|
|||| ||||||||||||||||||||| |
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|
| T |
39738128 |
ctcgttgatgatcaaatcaagttgaa |
39738153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 263
Target Start/End: Original strand, 53495633 - 53495816
Alignment:
| Q |
70 |
agcttgaaaaactacaaggcgaccgggctaaaatagctgagattcaagatcaagagaaagataagatcacatcttttaacaatgaagttaaatcaatttt |
169 |
Q |
| |
|
||||||||||||||||||| || |||| ||| | |||| ||||||||||||||| |||||||||||||||||||| ||||| |||| |||| |
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|
| T |
53495633 |
agcttgaaaaactacaaggtgaaagggccaaactggctgtgattcaagatcaagaaaaagataagatcacatctttgaacaaagaag---------tttt |
53495723 |
T |
|
| Q |
170 |
ccatcgcctcgctgatgatcaaatcaagttgaagagcgttgaagataaaatcctggaggcacaaactgaattggaaaggcatgagaaggtctac |
263 |
Q |
| |
|
|||||| || | ||||||||||||||||||||| || |||||| | |||||| ||||| ||||| |||||||||| || |||||||||||| |
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|
| T |
53495724 |
ccatcgtcttgttgatgatcaaatcaagttgaa-agtgttgaatacaaaatctctgaggccgaaactaaattggaaagtcacgagaaggtctac |
53495816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 199
Target Start/End: Complemental strand, 14329415 - 14329328
Alignment:
| Q |
113 |
tcaagatcaagaga-aagataagatcacatcttttaacaatgaagttaaatcaattttccatcgcctcgctgatgatcaaatcaagtt |
199 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||| ||||||||||||| | |||| ||||| |||||||||||| ||||| |
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|
| T |
14329415 |
tcaagatcaagagacaagataagatcacatctttcaacataaaagttaaatcaatatatcatcacctcgttgatgatcaaataaagtt |
14329328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 199
Target Start/End: Complemental strand, 14422425 - 14422338
Alignment:
| Q |
113 |
tcaagatcaagaga-aagataagatcacatcttttaacaatgaagttaaatcaattttccatcgcctcgctgatgatcaaatcaagtt |
199 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||| ||||||||||||| | |||| ||||| |||||||||||| ||||| |
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| T |
14422425 |
tcaagatcaagagacaagataagatcacatctttcaacataaaagttaaatcaatatatcatcacctcgttgatgatcaaataaagtt |
14422338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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