View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5749_high_17 (Length: 305)
Name: NF5749_high_17
Description: NF5749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5749_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-144; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 14 - 275
Target Start/End: Original strand, 24224168 - 24224429
Alignment:
| Q |
14 |
cagagaatcaaacacacgaaataacatattcgacagttccaaatccaaaaactaaccatacagaaaagtagacaaagaaaagaaaaacaggcacaaatga |
113 |
Q |
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| T |
24224168 |
cagagaatcaaacacacgaaataacatattcgacagtttcaaatccaaaaactaaccatacagaaaagtagacaaagaaaagaaaaacaggcacaaatga |
24224267 |
T |
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| Q |
114 |
taaatccatcaaatcttaagttttaatgacttcaatccaacatccagaaacaataactgtaattaacacacataacaaacacacaagaaaaattccccaa |
213 |
Q |
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| T |
24224268 |
taaatccatcaaatcttaagttttaatgacttcaatccaacatccagaaacaataactgtaattaacacacataacaaacacacaagaaaaattccccaa |
24224367 |
T |
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| Q |
214 |
atctaacacattcattcaagtataaataacagcactgaaaaatcacaaagataaaacaaaac |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24224368 |
atctaacacattcattcaagtataaataacagcactgaaaaatcacaaagataaaacaaaac |
24224429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 24215395 - 24215444
Alignment:
| Q |
104 |
gcacaaatgataaatccatcaaatcttaagttttaatgacttcaatccaa |
153 |
Q |
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| T |
24215395 |
gcacaattgaaaaatccttcaaatctgaagttttaataacttcaatccaa |
24215444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 24215575 - 24215611
Alignment:
| Q |
234 |
tataaataacagcactgaaaaatcacaaagataaaac |
270 |
Q |
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| T |
24215575 |
tatatataacagcactaaaaaatcacaaagataaaac |
24215611 |
T |
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