View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5749_high_21 (Length: 282)

Name: NF5749_high_21
Description: NF5749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5749_high_21
NF5749_high_21
[»] chr3 (1 HSPs)
chr3 (1-282)||(49622604-49622885)


Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 49622604 - 49622885
Alignment:
Q  1 aatattagacataactttaaatgatcttagccgtttgagattggatggttgatatcaataactgtgtcgcacttactacaccaaatccaaatcccctaat 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  49622604 aatattagacatagctttaaatgatcttagccgtttgagattggatggttgatatcaataactgcgtcgcacttactacaccaaatccaaatcccctaat 49622703  T
Q  101 cacatatttcaaggatcaatccttagcatatgattttttatttaagctttcatgtaatgagtgcatgcaactccctcaaccaataatgatgacgaatgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49622704 cacatatttcaaggatcaatccttagcatatgattttttatttaagctttcatgtaatgagtgcatgcaactccctcaaccaataatgatgacgaatgaa 49622803  T
Q  201 ttgcaatggaatgaaaatttggaacctcaaagcacatgattgagcaagctaggtagcacaggagggtactaaagcacatgat 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49622804 ttgcaatggaatgaaaatttggaacctcaaagcacatgattgagcaagctaggtagcacaggagggtactaaagcacatgat 49622885  T

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