View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5749_high_23 (Length: 272)
Name: NF5749_high_23
Description: NF5749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5749_high_23 |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 31645384 - 31645636
Alignment:
| Q |
1 |
cctaagatgtaatgagcaaattaatagtgtgatgaatattatataagattcttattttgaagcatataattaaacatatgtaacataattatattagcaa |
100 |
Q |
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| T |
31645384 |
cctaagatgttatgagcaa-ttaatagtgtgatgaatattatataagattcttattttgaagcatataattaaacatatgtagcataattatattagcaa |
31645482 |
T |
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| Q |
101 |
gataattacatgttccattaattctctaacatctcttccctcttttgtacttcttgcaactcctaactcaactccagaaaccctttcagcgaactttaaa |
200 |
Q |
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| T |
31645483 |
gataattacctgttccattaattctctaacatctcttccctcttttgtacttcttgcaactcctaactcaactccagaaaccctttcagcaaactttaaa |
31645582 |
T |
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| Q |
201 |
gtactcaaagattcagagtaagactttatgtctgaattaatttggacttacatg |
254 |
Q |
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| T |
31645583 |
gtactcaaagattcagagtaagactttatgtctgaattaatttggactaacatg |
31645636 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 220
Target Start/End: Original strand, 40982061 - 40982167
Alignment:
| Q |
114 |
tccattaattctctaacatctcttccctcttttgtacttcttgcaactcctaactcaactccagaaaccctttcagcgaactttaaagtactcaaagatt |
213 |
Q |
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||||||| |||||| ||||| ||||||||||| | || | ||| | ||||||||||| ||||||||||||||||| ||||| ||||| || | || || |
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| T |
40982061 |
tccattagttctctcacatcccttccctctttgttgctacgagcagcgcctaactcaacaccagaaaccctttcagcaaacttcaaagtgcttatagttt |
40982160 |
T |
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| Q |
214 |
cagagta |
220 |
Q |
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||||||| |
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| T |
40982161 |
cagagta |
40982167 |
T |
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