View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5749_high_30 (Length: 250)
Name: NF5749_high_30
Description: NF5749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5749_high_30 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 52374797 - 52375029
Alignment:
| Q |
1 |
cggagtaagattctgctcaacgaaatctccggtgaagcacgtgacggtgagagcatggctttcctcggagctagtggctctggtaaatcaactttgattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
52374797 |
cggagtaagattctgctcaacgaaatctccggtgaagcacgtgacggtgagatcatggctttcctcggagccagtggctctggtaaatcaactttgattg |
52374896 |
T |
|
| Q |
101 |
atgctctagcaaacaggatcgcaaaaggtaaattgaaaggaactgtgaagctcaacggagagtcggttgagtctcgtcttctgaaggtgatttctgccta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52374897 |
atgctctagcaaacaggatcgcaaaaggtaaattgaaaggaactgtgaagctcaacggagagtcggttgagtctcgtcttctgaaggtgatttctgccta |
52374996 |
T |
|
| Q |
201 |
tgtgatgcaagatgatctcctctttccaatgct |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
52374997 |
tgtgatgcaagatgatctcctctttccaatgct |
52375029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University