View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5749_high_6 (Length: 442)
Name: NF5749_high_6
Description: NF5749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5749_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 24 - 291
Target Start/End: Original strand, 7894420 - 7894687
Alignment:
| Q |
24 |
gttttgatcaaaatgagtgattgaattgattcatgaaaatgcagatgcttgaaagagaagcgttgcgaagaagcaatgttgatgatattcctcaagaaat |
123 |
Q |
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| T |
7894420 |
gttttgatcaaaatgagtgattgaattgattcatgaaaatgcagatgcttgaaagagaagcgttgcgaagaagcaatgttgatgatgttcctcaagaaat |
7894519 |
T |
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| Q |
124 |
ggttctggatcaacctcaacagaaacctatcaccaaactctatttgtctaatttggatgatcgggtttccaacgaagacattcatgtattacactgatta |
223 |
Q |
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| T |
7894520 |
ggttctggatcaacctcaccagaaacctatcaccaaactctatttgtctaatttggatgatcgggtttccaacgaagacattcatgtattacactgatta |
7894619 |
T |
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| Q |
224 |
ttactatttttgttatttatttatcatcaacatctttgttgtaatattgttatttgctacaagtactg |
291 |
Q |
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| T |
7894620 |
ttactatttttgttatttatttatcatcaacatctttgttgtaatattgttatttgctacaagtactg |
7894687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 351 - 429
Target Start/End: Original strand, 7894739 - 7894817
Alignment:
| Q |
351 |
tgactcggtgtcgtgttgaacactagacacgtctttcatcagaagtgtcggtgctacaaaggttatttgtttttctctt |
429 |
Q |
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| T |
7894739 |
tgactcggtgtcgtgttgaacactagacacgtctttcatcagaagtgtcggtgctacaaaggctatttgtttttctctt |
7894817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 411
Target Start/End: Original strand, 4785030 - 4785086
Alignment:
| Q |
355 |
tcggtgtcgtgttgaacactagacacgtctttcatcagaagtgtcggtgctacaaag |
411 |
Q |
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| T |
4785030 |
tcggtatcatgttggacaccagacacgtcttcgatcagaagtgtcggtgctacaaag |
4785086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 406
Target Start/End: Original strand, 4012786 - 4012829
Alignment:
| Q |
363 |
gtgttgaacactagacacgtctttcatcagaagtgtcggtgcta |
406 |
Q |
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| T |
4012786 |
gtgttggacaccagacacgtctttcatcggaagtgtcggtgcta |
4012829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 413
Target Start/End: Complemental strand, 35070047 - 35069998
Alignment:
| Q |
364 |
tgttgaacactagacacgtctttcatcagaagtgtcggtgctacaaaggt |
413 |
Q |
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| T |
35070047 |
tgttgaacactagacacaccttcaatcagaagtgtcggtgctacataggt |
35069998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 417
Target Start/End: Complemental strand, 18888083 - 18888039
Alignment:
| Q |
373 |
ctagacacgtctttcatcagaagtgtcggtgctacaaaggttatt |
417 |
Q |
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| T |
18888083 |
ctagacatgtctttgatctgaagtgtcgatgctacaaaggttatt |
18888039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 406
Target Start/End: Original strand, 38461839 - 38461883
Alignment:
| Q |
362 |
cgtgttgaacactagacacgtctttcatcagaagtgtcggtgcta |
406 |
Q |
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| T |
38461839 |
cgtgttgaacactagacacatcttcgatcataagtgtcggtgcta |
38461883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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