View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5749_low_10 (Length: 420)
Name: NF5749_low_10
Description: NF5749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5749_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 163; Significance: 6e-87; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 103 - 273
Target Start/End: Complemental strand, 43950416 - 43950246
Alignment:
| Q |
103 |
ttaatttatttcggaagttgatatcatttcggttcataataatctagtagaatgagtgttgattgttgaaaatacgggaatgcccttgttcattccaatc |
202 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43950416 |
ttaatttattttggaagttgatatcatttcggttcataataatctagtagaatgagtgttgattgttgaaaatacgggaatgcccttgttcattccaatc |
43950317 |
T |
|
| Q |
203 |
ttatctttttgttacaagtgtttcaaagcaagtgaaattcatgtttctttctctttttgttgtttaatata |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43950316 |
ttatctttttgttacaagtgtttcaaagcatgtgaaattcatgtttctttctctttttgttgtttaatata |
43950246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 43950572 - 43950481
Alignment:
| Q |
19 |
agaaaccactctcaatttaatcaagtacggttcattcccattttccttctttgtttttacattcgttttacgcaatgtctatccttaattta |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
43950572 |
agaaaccactctcaatttaatcaagtacggttcattcccattttccttctttgtttttacattcgttttacgcaatgtctatctttaattta |
43950481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 331 - 408
Target Start/End: Complemental strand, 43950205 - 43950128
Alignment:
| Q |
331 |
tggttggaaacaagaatcaacaatcaaattggtggtggcttgataatagtcacactaacaatactaaacgttctcctt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43950205 |
tggttggaaacaagaatcaacaatcaaattggtggtggcttgataatagtcacactaacaatactaaacgttctcctt |
43950128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University