View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5749_low_12 (Length: 405)
Name: NF5749_low_12
Description: NF5749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5749_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 75 - 388
Target Start/End: Complemental strand, 23939582 - 23939269
Alignment:
| Q |
75 |
actaaaagcaagaaaacagtgataaaaagagatgacatctttgaacaaactaagggatggaactagagtgctctagtcaagaactagacaaacgaagttt |
174 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23939582 |
actaaaagcaagaaaacagtgataaaaagagatgacatatttgaacaaactaagggatggaactagagtgctctagtcaagaactagacaaacgaggttt |
23939483 |
T |
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| Q |
175 |
ccattgatgtatatcaattagatgtcaagagtgtttttcatcataatcatagcaatagacaaattctttaggaaaaatgaggtactttcttggaaaagtt |
274 |
Q |
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||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
23939482 |
ccattgatgcatatcaattagatgtcaagagtgcttttcatcataatcatagcaataaacaaattatttaggaaaaatgaggtactttcttggagaagtt |
23939383 |
T |
|
| Q |
275 |
aagaagaatgatcaaggtattttcattattcaaagcaaatatactggtgaaatactaacaagatttgtcatggaaaactttaatatgttgtatagtctca |
374 |
Q |
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||| |||||||||||||||||||||| | ||||||||||||| |||| |||||||||||||||||| ||||||||| | | ||||| ||| |||||||| |
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| T |
23939382 |
aagcagaatgatcaaggtattttcatcaatcaaagcaaatatgttggttaaatactaacaagatttggcatggaaaattgtgatatggtgtgtagtctca |
23939283 |
T |
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| Q |
375 |
tagtcactcgaagc |
388 |
Q |
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|||||||| ||||| |
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| T |
23939282 |
tagtcactggaagc |
23939269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 23940478 - 23940401
Alignment:
| Q |
1 |
tgctcctacaaatccaacaccagaataagaaaaagctgcaaaggataataaactttgtgatctttaggtaaataacta |
78 |
Q |
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| T |
23940478 |
tgctcctacaaatccaacaccagaataagaaaaagctgcaaaggataataaactttgtgatctttaggtaaataacta |
23940401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 16862838 - 16862905
Alignment:
| Q |
11 |
aatccaacaccagaataagaaaaagctgcaaaggataataaactttgtgatctttaggtaaataacta |
78 |
Q |
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| T |
16862838 |
aatccaacaccagaacaagaaaaagctgcaaaggatagtaaacttcttgatcttaaggtgaaaaacta |
16862905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 20541779 - 20541850
Alignment:
| Q |
1 |
tgctcctacaaatccaacaccagaataagaaaaagctgcaaaggataataaactttgtgatctttaggtaaa |
72 |
Q |
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||||||| |||||||||||||||| ||||||||||||||||||||| ||||||| |||||| ||||||| |
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| T |
20541779 |
tgctcctgaaaatccaacaccagaacaagaaaaagctgcaaaggatagtaaacttcttgatctaaaggtaaa |
20541850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 40613542 - 40613465
Alignment:
| Q |
1 |
tgctcctacaaatccaacaccagaataagaaaaagctgcaaaggataataaactttgtgatctttaggtaaataacta |
78 |
Q |
| |
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||||||| |||||||||||||||| ||||||| ||||||||||| ||||||| |||||| ||||||| ||||| |
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| T |
40613542 |
tgctcctgaaaatccaacaccagaacaagaaaattttgcaaaggatagtaaacttcttgatctaaaggtaaaaaacta |
40613465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 20528454 - 20528531
Alignment:
| Q |
1 |
tgctcctacaaatccaacaccagaataagaaaaagctgcaaaggataataaactttgtgatctttaggtaaataacta |
78 |
Q |
| |
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||||||| ||||||||| |||||| |||| |||| ||| ||||||| ||| |||||||||||| |||| || ||||| |
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| T |
20528454 |
tgctcctgaaaatccaactccagaacaagagaaagttgcgaaggatagtaagctttgtgatcttaaggtgaagaacta |
20528531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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