View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5749_low_13 (Length: 385)
Name: NF5749_low_13
Description: NF5749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5749_low_13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 20361822 - 20361441
Alignment:
| Q |
1 |
caggttttcctttctgtgttgcttgaaaagtaatgtaatacaccctaccagcagttaaatcagtagcagcaggatgggtacacttgacaacattatgaaa |
100 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20361822 |
caggttttcctttatctgttgcttgaaaagtaatgtaatacaccctaccagcagttaaatcagtagcagcaggatgggtacacttgacaacattatgaaa |
20361723 |
T |
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| Q |
101 |
cacaaaagttggagcctaattaaataagtaaaagaagaattagtttagttaatgaacnnnnnnncaaacatactacaatacaatattattattaccaacc |
200 |
Q |
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| T |
20361722 |
cacaaaagttggagcctaattaaataagtaaaagaagaattagtttagttaatgaacaaaaaaacaaacatactacaatacaatattattattaccaacc |
20361623 |
T |
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| Q |
201 |
tgcttattcaaagcaacgttgcagagtttttcgagagtagggagcacatcttcatctaaatcgaggggtacaataccgccagatatatcgcaatcaagtg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20361622 |
tgcttattcaaagcaacgttgcagagtttttcgagagtagggagcacatcttcatctaaatcgaggggtacaataccgccagatatatcgcaatcaagtg |
20361523 |
T |
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| Q |
301 |
gagggcagatagcatcgtaaacctggtttgtgttgtccagaatcaatcatcaaaattaattaagagattgtttataagtgaaaca |
385 |
Q |
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| T |
20361522 |
gaggggagatagcatcgtaaacctggtttgtgttgtccagaatca---atcaaaattaattaagagattgtttataggtgaaaca |
20361441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 21549606 - 21549459
Alignment:
| Q |
19 |
ttgcttgaaaagtaatgtaatacaccctaccagcagttaaatcagtagcagcaggatgggtacacttgacaacattatgaaacacaaaagttggagccta |
118 |
Q |
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|||||| ||||||||||||||| |||||| |||| |||| ||||||| |||||||||||||||||||||| |||| |||||||||||||||| |||| |
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| T |
21549606 |
ttgctttaaaagtaatgtaatataccctaggagcatataaagaagtagcaccaggatgggtacacttgacaactttatcaaacacaaaagttggacccta |
21549507 |
T |
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| Q |
119 |
at------taaataagt-aaaaga---agaattagtttagttaatgaa |
156 |
Q |
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| T |
21549506 |
atcaataataaataagtaaaaagaattagaattagtttagttaatgaa |
21549459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 55193938 - 55193886
Alignment:
| Q |
61 |
cagtagcagcaggatgggtacacttgacaacattatgaaacacaaaagttgga |
113 |
Q |
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| T |
55193938 |
cagtaccaccagcatgagtacacttgacaactttatgaaacacaaaagttgga |
55193886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 11031910 - 11031962
Alignment:
| Q |
61 |
cagtagcagcaggatgggtacacttgacaacattatgaaacacaaaagttgga |
113 |
Q |
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| T |
11031910 |
cagtaccaccagcatgagtacacttgacaactttatgaaccacaaaagttgga |
11031962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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