View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5749_low_15 (Length: 362)
Name: NF5749_low_15
Description: NF5749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5749_low_15 |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 362
Target Start/End: Original strand, 36870365 - 36870709
Alignment:
| Q |
18 |
tgtagaacaatagaatgtttatcaaatataaagatgtgctggaaaaaaggaacatgaatccccaacatcttcagtacgcttctaatccattctttcttgc |
117 |
Q |
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| T |
36870365 |
tgtagaacaatagaatgtttatcaaatataaagatgtgctggaaaaaaggaacatgaatccccaacatcttcagtacgtttctaatccattcttccttgc |
36870464 |
T |
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| Q |
118 |
atcatctcagaattctcaaatctaaaagcataacagagaacacttgaaatgcattgacacctagagacgtgaagaacaaacatcttaccgaggaacatgt |
217 |
Q |
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| T |
36870465 |
atcatctcagaattctcaaatctaaaagcataacagagaacacttgaaatgcattgacacctagagacgtgaagaacaaacatcttaccgaggaacatgt |
36870564 |
T |
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| Q |
218 |
gacatacatccagcaacacctgctccattggtatctactaatttctctttcggaactaggataacagggtaaaatgtcgcattcccatcttgagaaatgc |
317 |
Q |
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| T |
36870565 |
gacatacatccagcaacacctgctccattggtatctactaatttctcttttggaactagtataacagggtaaaatgtcgcattcccatcttgagaaatgc |
36870664 |
T |
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| Q |
318 |
atacaagatcaacaccctgtgtgataagtaatacttttgtgtgtt |
362 |
Q |
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| T |
36870665 |
atacaagatcaacaccctgtgtgataagtaatacttttgtgtgtt |
36870709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 102 - 208
Target Start/End: Original strand, 38275250 - 38275356
Alignment:
| Q |
102 |
atccattctttcttgcatcatctcagaattctcaaatctaaaagcataacagagaacacttgaaatgcattgacacctagagacgtgaagaacaaacatc |
201 |
Q |
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| T |
38275250 |
atccattcttccttgaatcatctcagacatctcaattctaaaagcatgacagtgaacacacaaaatacattgacacctagagacgtggataacaaacatc |
38275349 |
T |
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| Q |
202 |
ttaccga |
208 |
Q |
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| T |
38275350 |
ttaccga |
38275356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 230 - 344
Target Start/End: Original strand, 28168463 - 28168577
Alignment:
| Q |
230 |
gcaacacctgctccattggtatctactaatttctctttcggaactaggataacagggtaaaatgtcgcattcccatcttgagaaatgcatacaagatcaa |
329 |
Q |
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| T |
28168463 |
gcaatacctgctccattggtatcaactaatttctctttaggtaatagtataacagggtacaatgtcactttcccatcttgagcaacacatacgggatcag |
28168562 |
T |
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| Q |
330 |
caccctgtgtgataa |
344 |
Q |
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| T |
28168563 |
caccctgtgtgataa |
28168577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 235 - 362
Target Start/End: Complemental strand, 22477262 - 22477133
Alignment:
| Q |
235 |
acctgctccattggtatctactaatttctctttcggaactaggataacagggtaaaatgtcgcattcccatcttgagaaatgcatacaagatcaacaccc |
334 |
Q |
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|||||||||||||||||| |||||||||||||| || | ||| || |||||||| |||||| | ||||||||||||| || || || ||||| ||||| |
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| T |
22477262 |
acctgctccattggtatcaactaatttctctttaggtaatagaattacagggtacaatgtcactttcccatcttgagcaacacacacgggatcagcaccc |
22477163 |
T |
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| Q |
335 |
tgtgtgataa--gtaatacttttgtgtgtt |
362 |
Q |
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| T |
22477162 |
tgtgtgataacggtaatccttttgtgtgtt |
22477133 |
T |
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