View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5749_low_17 (Length: 342)

Name: NF5749_low_17
Description: NF5749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5749_low_17
NF5749_low_17
[»] chr6 (4 HSPs)
chr6 (1-326)||(31076416-31076742)
chr6 (270-326)||(31076315-31076371)
chr6 (19-55)||(9183307-9183343)
chr6 (19-55)||(31404950-31404986)
[»] chr8 (11 HSPs)
chr8 (3-55)||(3051413-3051465)
chr8 (3-60)||(28307855-28307912)
chr8 (3-55)||(4696361-4696412)
chr8 (19-55)||(12702914-12702950)
chr8 (19-55)||(15212642-15212678)
chr8 (19-55)||(17982509-17982545)
chr8 (19-55)||(19948597-19948633)
chr8 (19-55)||(30143198-30143234)
chr8 (19-55)||(34254604-34254640)
chr8 (19-55)||(42498050-42498086)
chr8 (23-55)||(44303710-44303742)
[»] chr5 (8 HSPs)
chr5 (19-55)||(28750931-28750967)
chr5 (3-55)||(42428690-42428742)
chr5 (19-55)||(13342917-13342953)
chr5 (19-55)||(25412618-25412654)
chr5 (19-55)||(30182445-30182481)
chr5 (19-55)||(30683196-30683232)
chr5 (19-55)||(36074320-36074356)
chr5 (19-55)||(39468825-39468861)
[»] chr4 (8 HSPs)
chr4 (113-257)||(1982820-1982962)
chr4 (19-55)||(56178912-56178948)
chr4 (3-36)||(3793849-3793882)
chr4 (19-55)||(26175912-26175948)
chr4 (19-55)||(30000081-30000117)
chr4 (19-55)||(52082933-52082969)
chr4 (19-55)||(52093940-52093976)
chr4 (19-55)||(52095638-52095674)
[»] chr1 (5 HSPs)
chr1 (144-216)||(9022516-9022588)
chr1 (19-55)||(20762528-20762564)
chr1 (3-55)||(1833378-1833430)
chr1 (19-55)||(30476724-30476760)
chr1 (19-55)||(31659094-31659130)
[»] chr7 (3 HSPs)
chr7 (3-44)||(47676396-47676437)
chr7 (19-55)||(23554896-23554932)
chr7 (19-55)||(30025008-30025044)
[»] chr3 (2 HSPs)
chr3 (136-180)||(27305790-27305834)
chr3 (187-215)||(53921931-53921959)
[»] chr2 (1 HSPs)
chr2 (19-55)||(36988351-36988387)


Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 31076742 - 31076416
Alignment:
Q  1 atagttatctcctttatattcccaagtttctctctcttcaagctttctttcaaaaatgaatcgtgaaagtgtaaatagtaccttgtaacaatcaaaattg 100  Q
    ||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31076742 atagttatctcctttgtattcccaagtttctttctcttcaaactttctttcaaaaatgaattgtgaaagtgtaaatagtaccttgtaacaatcaaaattg 31076643  T
Q  101 tcacatttagtcaaatcatgtcatgatt-cgtaacatacgatctaaggtacacaaatcttatgcacaaattgtatcacgatggccacaaatcgtgtcacg 199  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||    
T  31076642 tcacatttagtcaaatcatgtcatgatttcgtaacatacgatctaaggtacacaaatcttatgcacaaatcgtgtcacgatagccacaaatcgtgtcacg 31076543  T
Q  200 attttcctccaaaaaactccatgttcattgcctatgaaatcgtgtcacgccatccaaattgtcaaaacaattacaactgatagaacaataataatgtaca 299  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |    
T  31076542 attttcctccaaaaaactccatgttcattgcctataaaatcgtgtcacgccatccaaattatcaaaacaattacaactgataggacaataataatgtata 31076443  T
Q  300 atgcacatgcgatagtgaactaatttc 326  Q
    |||||||||||||||||||||||||||    
T  31076442 atgcacatgcgatagtgaactaatttc 31076416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 270 - 326
Target Start/End: Complemental strand, 31076371 - 31076315
Alignment:
Q  270 ttacaactgatagaacaataataatgtacaatgcacatgcgatagtgaactaatttc 326  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  31076371 ttacaactgatagaataataataatgtacaatgcacatgcgaaagtgaactaatttc 31076315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 9183307 - 9183343
Alignment:
Q  19 ttcccaagtttctctctcttcaagctttctttcaaaa 55  Q
    |||||||||||||||||||||||||| || |||||||    
T  9183307 ttcccaagtttctctctcttcaagctctccttcaaaa 9183343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 31404950 - 31404986
Alignment:
Q  19 ttcccaagtttctctctcttcaagctttctttcaaaa 55  Q
    |||||||||||||||||||||||||| || |||||||    
T  31404950 ttcccaagtttctctctcttcaagctctccttcaaaa 31404986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 3051413 - 3051465
Alignment:
Q  3 agttatctcctttatattcccaagtttctctctcttcaagctttctttcaaaa 55  Q
    |||| ||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  3051413 agttctctcctttatagtcccaagtttctctctcttcaagctctctttcaaaa 3051465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 28307855 - 28307912
Alignment:
Q  3 agttatctcctttatattcccaagtttctctctcttcaagctttctttcaaaaatgaa 60  Q
    ||||| ||||||| || ||| ||||||||||||||||||||| || ||||||||||||    
T  28307855 agttacctcctttgtaatcctaagtttctctctcttcaagctctcattcaaaaatgaa 28307912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 4696412 - 4696361
Alignment:
Q  3 agttatctcctttatattcccaagtttctctctcttcaagctttctttcaaaa 55  Q
    ||||||||||||| || ||| ||||||||||||||||||||| || |||||||    
T  4696412 agttatctcctttgtaatcc-aagtttctctctcttcaagctctccttcaaaa 4696361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 12702914 - 12702950
Alignment:
Q  19 ttcccaagtttctctctcttcaagctttctttcaaaa 55  Q
    |||||||||||||||||||||||||| || |||||||    
T  12702914 ttcccaagtttctctctcttcaagctctccttcaaaa 12702950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 15212678 - 15212642
Alignment:
Q  19 ttcccaagtttctctctcttcaagctttctttcaaaa 55  Q
    |||||||||||||||||||||||||| || |||||||    
T  15212678 ttcccaagtttctctctcttcaagctctccttcaaaa 15212642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 17982545 - 17982509
Alignment:
Q  19 ttcccaagtttctctctcttcaagctttctttcaaaa 55  Q
    |||||||||||||||||||||||||| || |||||||    
T  17982545 ttcccaagtttctctctcttcaagctctccttcaaaa 17982509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 19948597 - 19948633
Alignment:
Q  19 ttcccaagtttctctctcttcaagctttctttcaaaa 55  Q
    |||||||||||||||||||||||||| || |||||||    
T  19948597 ttcccaagtttctctctcttcaagctctccttcaaaa 19948633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 30143234 - 30143198
Alignment:
Q  19 ttcccaagtttctctctcttcaagctttctttcaaaa 55  Q
    |||||||||||||||||||||||||| || |||||||    
T  30143234 ttcccaagtttctctctcttcaagctctccttcaaaa 30143198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 34254604 - 34254640
Alignment:
Q  19 ttcccaagtttctctctcttcaagctttctttcaaaa 55  Q
    |||||||||||||||||||||||||| || |||||||    
T  34254604 ttcccaagtttctctctcttcaagctctccttcaaaa 34254640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 42498086 - 42498050
Alignment:
Q  19 ttcccaagtttctctctcttcaagctttctttcaaaa 55  Q
    |||||||||||||||||||||||||| || |||||||    
T  42498086 ttcccaagtttctctctcttcaagctctccttcaaaa 42498050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 44303742 - 44303710
Alignment:
Q  23 caagtttctctctcttcaagctttctttcaaaa 55  Q
    |||||||||||||||||||||| ||||||||||    
T  44303742 caagtttctctctcttcaagctctctttcaaaa 44303710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 28750931 - 28750967
Alignment:
Q  19 ttcccaagtttctctctcttcaagctttctttcaaaa 55  Q
    |||||||||||||||||||||||||| ||||||||||    
T  28750931 ttcccaagtttctctctcttcaagctctctttcaaaa 28750967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 42428690 - 42428742
Alignment:
Q  3 agttatctcctttatattcccaagtttctctctcttcaagctttctttcaaaa 55  Q
    |||||||||||||   |||||||||||||||||||||||||| || |||||||    
T  42428690 agttatctcctttgatttcccaagtttctctctcttcaagctctccttcaaaa 42428742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 13342953 - 13342917
Alignment:
Q  19 ttcccaagtttctctctcttcaagctttctttcaaaa 55  Q
    |||||||||||||||||||||||||| || |||||||    
T  13342953 ttcccaagtttctctctcttcaagctctccttcaaaa 13342917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 25412654 - 25412618
Alignment:
Q  19 ttcccaagtttctctctcttcaagctttctttcaaaa 55  Q
    |||||||||||||||||||||||||| || |||||||    
T  25412654 ttcccaagtttctctctcttcaagctctccttcaaaa 25412618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 30182481 - 30182445
Alignment:
Q  19 ttcccaagtttctctctcttcaagctttctttcaaaa 55  Q
    |||||||||||||||||||||||||| || |||||||    
T  30182481 ttcccaagtttctctctcttcaagctctcattcaaaa 30182445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 30683196 - 30683232
Alignment:
Q  19 ttcccaagtttctctctcttcaagctttctttcaaaa 55  Q
    |||||||||||||||||||||||||| || |||||||    
T  30683196 ttcccaagtttctctctcttcaagctctccttcaaaa 30683232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 36074320 - 36074356
Alignment:
Q  19 ttcccaagtttctctctcttcaagctttctttcaaaa 55  Q
    |||||||||||||||||||||||||| || |||||||    
T  36074320 ttcccaagtttctctctcttcaagctctccttcaaaa 36074356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 39468825 - 39468861
Alignment:
Q  19 ttcccaagtttctctctcttcaagctttctttcaaaa 55  Q
    |||||||||||||||||||||||||| || |||||||    
T  39468825 ttcccaagtttctctctcttcaagctctccttcaaaa 39468861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 257
Target Start/End: Complemental strand, 1982962 - 1982820
Alignment:
Q  113 aaatcatgtcatgattcgtaacatacgatctaaggtacacaaatcttatgcacaaattgtatcacgatggccacaaatcgtgtcacgattttcctccaaa 212  Q
    ||||| ||||| |||||||||| ||||| | |||||||| ||| ||||| || ||||||| |||||||||    ||||| |||||||||||| | ||| |    
T  1982962 aaatcgtgtcacgattcgtaacgtacgacccaaggtaca-aaaccttatccaaaaattgtgtcacgatggatcaaaatcttgtcacgattttacaccaga 1982864  T
Q  213 aaactccatgttcattgcctatgaaatcgtgtcacgccatccaaa 257  Q
     ||  ||||||||  |||| | ||||||||||||||||| |||||    
T  1982863 gaaa-ccatgttctatgccaacgaaatcgtgtcacgccacccaaa 1982820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 56178912 - 56178948
Alignment:
Q  19 ttcccaagtttctctctcttcaagctttctttcaaaa 55  Q
    |||||||||||||||||||||||||| ||||||||||    
T  56178912 ttcccaagtttctctctcttcaagctctctttcaaaa 56178948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 3793882 - 3793849
Alignment:
Q  3 agttatctcctttatattcccaagtttctctctc 36  Q
    ||||| ||||||||||||||||||||||||||||    
T  3793882 agttacctcctttatattcccaagtttctctctc 3793849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 26175912 - 26175948
Alignment:
Q  19 ttcccaagtttctctctcttcaagctttctttcaaaa 55  Q
    |||||||||||||||||||||||||| || |||||||    
T  26175912 ttcccaagtttctctctcttcaagctctccttcaaaa 26175948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 30000081 - 30000117
Alignment:
Q  19 ttcccaagtttctctctcttcaagctttctttcaaaa 55  Q
    |||||||||||||||||||||||||| || |||||||    
T  30000081 ttcccaagtttctctctcttcaagctctccttcaaaa 30000117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 52082933 - 52082969
Alignment:
Q  19 ttcccaagtttctctctcttcaagctttctttcaaaa 55  Q
    |||||||||||||||||||||||||| || |||||||    
T  52082933 ttcccaagtttctctctcttcaagctgtccttcaaaa 52082969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 52093940 - 52093976
Alignment:
Q  19 ttcccaagtttctctctcttcaagctttctttcaaaa 55  Q
    |||||||||||||||||||||||||| || |||||||    
T  52093940 ttcccaagtttctctctcttcaagctgtccttcaaaa 52093976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 52095638 - 52095674
Alignment:
Q  19 ttcccaagtttctctctcttcaagctttctttcaaaa 55  Q
    |||||||||||||||||||||||||| || |||||||    
T  52095638 ttcccaagtttctctctcttcaagctgtccttcaaaa 52095674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 9022588 - 9022516
Alignment:
Q  144 aaggtacacaaatcttatgcacaaattgtatcacgatggccacaaatcgtgtcacgattttcctccaaaaaac 216  Q
    |||||||  ||||||||| || ||||||| ||||||||||   |||||||||||||||||| | |||||||||    
T  9022588 aaggtacgaaaatcttatccaaaaattgtgtcacgatggctcaaaatcgtgtcacgattttacaccaaaaaac 9022516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 20762564 - 20762528
Alignment:
Q  19 ttcccaagtttctctctcttcaagctttctttcaaaa 55  Q
    |||||||||||||||||||||||||| ||||||||||    
T  20762564 ttcccaagtttctctctcttcaagctctctttcaaaa 20762528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 1833430 - 1833378
Alignment:
Q  3 agttatctcctttatattcccaagtttctctctcttcaagctttctttcaaaa 55  Q
    |||||||||||||   ||||||||||||||||||||||| || || |||||||    
T  1833430 agttatctcctttgatttcccaagtttctctctcttcaatctctcattcaaaa 1833378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 30476724 - 30476760
Alignment:
Q  19 ttcccaagtttctctctcttcaagctttctttcaaaa 55  Q
    |||||||||||||||||||||||||| || |||||||    
T  30476724 ttcccaagtttctctctcttcaagctctccttcaaaa 30476760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 31659130 - 31659094
Alignment:
Q  19 ttcccaagtttctctctcttcaagctttctttcaaaa 55  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  31659130 ttcccaagtttctctctcttcaagctctctctcaaaa 31659094  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 47676396 - 47676437
Alignment:
Q  3 agttatctcctttatattcccaagtttctctctcttcaagct 44  Q
    |||||||||||||   ||||||||||||||||||||||||||    
T  47676396 agttatctcctttgatttcccaagtttctctctcttcaagct 47676437  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 23554932 - 23554896
Alignment:
Q  19 ttcccaagtttctctctcttcaagctttctttcaaaa 55  Q
    |||||||||||||||||||||||||| || |||||||    
T  23554932 ttcccaagtttctctctcttcaagctctccttcaaaa 23554896  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 30025008 - 30025044
Alignment:
Q  19 ttcccaagtttctctctcttcaagctttctttcaaaa 55  Q
    |||||||||||||||||||||||||| || |||||||    
T  30025008 ttcccaagtttctctctcttcaagctctcattcaaaa 30025044  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 27305790 - 27305834
Alignment:
Q  136 tacgatctaaggtacacaaatcttatgcacaaattgtatcacgat 180  Q
    ||||||| |||||||||||||||||| ||||||| || |||||||    
T  27305790 tacgatccaaggtacacaaatcttatccacaaatcgtgtcacgat 27305834  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 215
Target Start/End: Original strand, 53921931 - 53921959
Alignment:
Q  187 aaatcgtgtcacgattttcctccaaaaaa 215  Q
    |||||||||||||||||||||||||||||    
T  53921931 aaatcgtgtcacgattttcctccaaaaaa 53921959  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 36988351 - 36988387
Alignment:
Q  19 ttcccaagtttctctctcttcaagctttctttcaaaa 55  Q
    |||||||||||||||||||||||||| || |||||||    
T  36988351 ttcccaagtttctctctcttcaagctctccttcaaaa 36988387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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