View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5749_low_21 (Length: 285)
Name: NF5749_low_21
Description: NF5749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5749_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 24225058 - 24224797
Alignment:
| Q |
18 |
atacccacgacacctactccatcaccttcgactccaccttcacaatccaatccctcttaacctccacaccctccgtcgtcgacacctggctcctcgaaac |
117 |
Q |
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| T |
24225058 |
atacccacgacacctactccatcaccttcgactccaccttcacaatccaatccctcttaacctccacaccctccgtcgtcgacacctggctcctcgaaac |
24224959 |
T |
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| Q |
118 |
cctccacctccaccccccattccccgtcctcgtcggcctcgacgtcgaatggcgccccaatttcaaacgcggccaatccaacccaaccgccgtcctccag |
217 |
Q |
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| T |
24224958 |
cctccgcctccaccccccattccccgtcctcgtcggcctcgacgtcgaatggcgccccaatttcaaacgcggccaatccaacccaaccgccgtcctccag |
24224859 |
T |
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| Q |
218 |
ctctgtatcaacaaccgctgcctcgttttccaaatcatgcactccccgttcatccccgtttc |
279 |
Q |
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| T |
24224858 |
ctctgtatcaacaaccgctgcctcgttttccaaatcatgcactcccccttcatccctgtttc |
24224797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 24229071 - 24229124
Alignment:
| Q |
20 |
acccacgacacctactccatcaccttcgactccaccttcacaatccaatccctc |
73 |
Q |
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| T |
24229071 |
acccacaacacctactccatcaccatcgacaccaccctcacaatccaaaccctc |
24229124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 264
Target Start/End: Complemental strand, 24216052 - 24216000
Alignment:
| Q |
212 |
ctccagctctgtatcaacaaccgctgcctcgttttccaaatcatgcactcccc |
264 |
Q |
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| T |
24216052 |
ctccaactctgcatcaacaacttctgcctcgttttccagatcatccactcccc |
24216000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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