View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5749_low_22 (Length: 285)
Name: NF5749_low_22
Description: NF5749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5749_low_22 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 3346050 - 3346317
Alignment:
| Q |
18 |
attcacctcaaaaaacaaaagaacaatatcattatcaatgtatgataagtttacacaacttgtgtaaaatatcatttggataaactttgcattccataat |
117 |
Q |
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| T |
3346050 |
attcacctcaaaaaacaaaagaacaatatcattatcaatgtatgataagtttacacaacttgtgtaaaatagcatttggataaacttagcattccataat |
3346149 |
T |
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| Q |
118 |
tcaatttaaggttgatgtaaccaatgccaaacatactcatacaaaaagatcatcctatattgtcggtgaagaaataaaagatcattcccataactgccca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3346150 |
tcaatttaaggttgatgtaaccaatgccaaacatactcatacaaaaagatcatcctatattgtcggtgaagaaataaaagatcattcccataactgccca |
3346249 |
T |
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| Q |
218 |
attaagtagaagtttcattacatatataataaagttgaccattttcataaccatgtgtcatttgatct |
285 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3346250 |
attaagtagaagtttcattaaatatataataaagttgaccattttcataaccatgtgtcatttgatct |
3346317 |
T |
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