View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5749_low_26 (Length: 269)

Name: NF5749_low_26
Description: NF5749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5749_low_26
NF5749_low_26
[»] chr8 (5 HSPs)
chr8 (100-247)||(39047208-39047362)
chr8 (176-241)||(5076263-5076328)
chr8 (114-171)||(9512438-9512495)
chr8 (1-35)||(39047109-39047143)
chr8 (172-225)||(5015426-5015479)
[»] chr1 (5 HSPs)
chr1 (172-241)||(16313945-16314014)
chr1 (175-247)||(1181497-1181569)
chr1 (172-235)||(7014985-7015048)
chr1 (171-241)||(43514381-43514451)
chr1 (190-240)||(9355411-9355461)
[»] chr5 (5 HSPs)
chr5 (172-235)||(29195248-29195311)
chr5 (175-241)||(12143853-12143919)
chr5 (181-235)||(20882950-20883004)
chr5 (172-241)||(35048733-35048801)
chr5 (172-224)||(40018105-40018157)
[»] chr4 (11 HSPs)
chr4 (172-241)||(54185607-54185676)
chr4 (175-235)||(22923321-22923381)
chr4 (175-235)||(22927974-22928034)
chr4 (175-235)||(22984253-22984313)
chr4 (175-235)||(22997841-22997901)
chr4 (173-235)||(12657194-12657256)
chr4 (172-225)||(45864951-45865004)
chr4 (175-241)||(32304884-32304950)
chr4 (113-171)||(43138908-43138966)
chr4 (116-167)||(16935543-16935594)
chr4 (172-219)||(21283799-21283846)
[»] chr7 (3 HSPs)
chr7 (174-241)||(432933-433000)
chr7 (172-241)||(44226520-44226589)
chr7 (111-171)||(47441624-47441684)
[»] chr6 (4 HSPs)
chr6 (181-235)||(1031791-1031845)
chr6 (175-241)||(7527068-7527134)
chr6 (171-219)||(4410234-4410282)
chr6 (172-220)||(35018739-35018787)
[»] scaffold0001 (1 HSPs)
scaffold0001 (172-224)||(185436-185488)
[»] chr3 (4 HSPs)
chr3 (172-224)||(30842114-30842166)
chr3 (175-235)||(46637060-46637120)
chr3 (174-241)||(46182981-46183048)
chr3 (171-225)||(20513508-20513562)
[»] chr2 (4 HSPs)
chr2 (172-235)||(5848090-5848153)
chr2 (172-225)||(19380219-19380272)
chr2 (181-224)||(187267-187310)
chr2 (175-241)||(11816083-11816149)
[»] scaffold0010 (1 HSPs)
scaffold0010 (174-224)||(28599-28649)
[»] scaffold0015 (1 HSPs)
scaffold0015 (175-219)||(33592-33636)


Alignment Details
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 100 - 247
Target Start/End: Original strand, 39047208 - 39047362
Alignment:
Q  100 gttttattcgagcgtgagttaacccacgcggcgttcgttaagtaatacagagtttaacacttgcgttactta-------cagcgttaattaactaacgca 192  Q
    ||||||||| ||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||| |||       |||||||| ||||||||||||    
T  39047208 gttttattccagcgtgagttaacccacacggcattcgttaagtaacacagagtttaacacttgcgttatttaacctgcgcagcgttagttaactaacgca 39047307  T
Q  193 tagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgta 247  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||| ||||    
T  39047308 tagtttttcacttgcgttagttaactagcgcaaggataaatttaaaacgattgta 39047362  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 5076263 - 5076328
Alignment:
Q  176 gttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacg 241  Q
    |||| ||||||| ||||||||||| || |||||||||||||||| ||||||| ||||||| |||||    
T  5076263 gttagttaactagcgcatagttttacatttgcgttagttaactaacgcaatggtaaatttgaaacg 5076328  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 171
Target Start/End: Original strand, 9512438 - 9512495
Alignment:
Q  114 tgagttaacccacgcggcgttcgttaagtaatacagagtttaacacttgcgttactta 171  Q
    ||||||||| ||||| ||||| ||||| ||| ||||||||||||||||||||||||||    
T  9512438 tgagttaactcacgcagcgttagttaaataacacagagtttaacacttgcgttactta 9512495  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 39047109 - 39047143
Alignment:
Q  1 agcatgaatttagaataacagttcatactcttttt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  39047109 agcatgaatttagaataacagttcatactcttttt 39047143  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 5015479 - 5015426
Alignment:
Q  172 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaa 225  Q
    |||||||| ||||||| ||||||||||| ||  ||||||||||||||| |||||    
T  5015479 cagcgttagttaactagcgcatagttttacacgtgcgttagttaactaacgcaa 5015426  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 241
Target Start/End: Complemental strand, 16314014 - 16313945
Alignment:
Q  172 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacg 241  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||||||| | ||||||| |||||    
T  16314014 cagcgttagttaactaacgcatagtttttcacttgcgttagttaactagcgcaagggtaaatttgaaacg 16313945  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 1181497 - 1181569
Alignment:
Q  175 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgta 247  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||| | ||||||| ||| |||||||    
T  1181497 cgttagttaactaacgcatagtttttcacttgcgttagttaactagcgcaagggtaaatttgaaaagactgta 1181569  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 7014985 - 7015048
Alignment:
Q  172 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaattt 235  Q
    |||||||| ||||||||||| |||||||||| |||||||||||||||||||||| | |||||||    
T  7014985 cagcgttagttaactaacgcgtagtttttcacttgcgttagttaactagcgcaagggtaaattt 7015048  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 43514451 - 43514381
Alignment:
Q  171 acagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacg 241  Q
    |||| |||| |||||||  |||||||||| || |||||||||||||||| ||||| | |||||||||||||    
T  43514451 acagtgttacttaactagtgcatagttttacacttgcgttagttaactaacgcaagggtaaatttaaaacg 43514381  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 9355411 - 9355461
Alignment:
Q  190 gcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaac 240  Q
    |||||||||| || |||||||||||||||||||||| | |||| |||||||    
T  9355411 gcatagttttacacttgcgttagttaactagcgcaagggtaaacttaaaac 9355461  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 29195311 - 29195248
Alignment:
Q  172 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaattt 235  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||||||| | |||||||    
T  29195311 cagcgttagttaactaacgcatagtttttcacttgcgttagttaactagcgcaagggtaaattt 29195248  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 12143919 - 12143853
Alignment:
Q  175 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacg 241  Q
    ||||| ||||||||| |||||||||||| |||||||||||||||||||||| | |||||||| ||||    
T  12143919 cgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaaaggtaaatttagaacg 12143853  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 20883004 - 20882950
Alignment:
Q  181 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaattt 235  Q
    ||||||||| |||||||||||| |||||||||||||||||||||| | |||||||    
T  20883004 ttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaattt 20882950  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 241
Target Start/End: Complemental strand, 35048801 - 35048733
Alignment:
Q  172 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacg 241  Q
    |||||||| ||||||||||||| |||||||| |||||||| ||||||| ||||| | ||||||| |||||    
T  35048801 cagcgttagttaactaacgcat-gtttttcacttgcgttaattaactaacgcaagggtaaatttgaaacg 35048733  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 40018157 - 40018105
Alignment:
Q  172 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgca 224  Q
    |||| ||| ||||||||||||||||||| || |||||||||||||||| ||||    
T  40018157 cagcattagttaactaacgcatagttttacacttgcgttagttaactaacgca 40018105  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 241
Target Start/End: Original strand, 54185607 - 54185676
Alignment:
Q  172 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacg 241  Q
    |||||||| ||||||| ||||||||||| || |||||||||||||||||||||| | ||||||| |||||    
T  54185607 cagcgttacttaactagcgcatagttttacacttgcgttagttaactagcgcaagggtaaatttgaaacg 54185676  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 22923321 - 22923381
Alignment:
Q  175 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaattt 235  Q
    ||||| ||||||||| |||||||||||| |||||||||||||||||||||| | |||||||    
T  22923321 cgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaattt 22923381  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 22927974 - 22928034
Alignment:
Q  175 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaattt 235  Q
    ||||| ||||||||| |||||||||||| |||||||||||||||||||||| | |||||||    
T  22927974 cgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaattt 22928034  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 22984253 - 22984313
Alignment:
Q  175 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaattt 235  Q
    ||||| ||||||||| |||||||||||| |||||||||||||||||||||| | |||||||    
T  22984253 cgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaattt 22984313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 22997841 - 22997901
Alignment:
Q  175 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaattt 235  Q
    ||||| ||||||||| |||||||||||| |||||||||||||||||||||| | |||||||    
T  22997841 cgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaattt 22997901  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 12657194 - 12657256
Alignment:
Q  173 agcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaattt 235  Q
    ||||||| ||||||||| |||||||||||| ||| |||||||||||||||||| | |||||||    
T  12657194 agcgttagttaactaacacatagtttttcacttgtgttagttaactagcgcaagggtaaattt 12657256  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 45864951 - 45865004
Alignment:
Q  172 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaa 225  Q
    |||||||| ||||||||||||||||||| || |||| |||||||||||||||||    
T  45864951 cagcgttacttaactaacgcatagttttacacttgcattagttaactagcgcaa 45865004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 32304950 - 32304884
Alignment:
Q  175 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacg 241  Q
    ||||| ||||||||| ||||||||| || |||||| ||||||||||||||| | |||||||| ||||    
T  32304950 cgttagttaactaacacatagttttacacttgcgtgagttaactagcgcaagggtaaatttagaacg 32304884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 43138966 - 43138908
Alignment:
Q  113 gtgagttaacccacgcggcgttcgttaagtaatacagagtttaacacttgcgttactta 171  Q
    |||||||||| ||||| ||||| ||||||||| || ||||||||||||||||| |||||    
T  43138966 gtgagttaacacacgcagcgttagttaagtaacacggagtttaacacttgcgtcactta 43138908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 167
Target Start/End: Complemental strand, 16935594 - 16935543
Alignment:
Q  116 agttaacccacgcggcgttcgttaagtaatacagagtttaacacttgcgtta 167  Q
    ||||||| ||||| ||||| ||||||||  ||||||||||||||||||||||    
T  16935594 agttaactcacgcagcgttagttaagtagcacagagtttaacacttgcgtta 16935543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 21283846 - 21283799
Alignment:
Q  172 cagcgttaattaactaacgcatagtttttcaattgcgttagttaacta 219  Q
    |||||||| ||||||||| ||||||||| || ||||||||||||||||    
T  21283846 cagcgttagttaactaacacatagttttacacttgcgttagttaacta 21283799  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 432933 - 433000
Alignment:
Q  174 gcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacg 241  Q
    |||||| |||||||||||||| |||| || |||||||||||||||||||||| | ||||||| |||||    
T  432933 gcgttagttaactaacgcataattttacacttgcgttagttaactagcgcaagggtaaatttgaaacg 433000  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 241
Target Start/End: Original strand, 44226520 - 44226589
Alignment:
Q  172 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacg 241  Q
    |||||||| ||||||||| |||||||||||| ||||||| ||||||||| |||| | ||||||| |||||    
T  44226520 cagcgttagttaactaacacatagtttttcacttgcgttggttaactagagcaagggtaaatttgaaacg 44226589  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 47441684 - 47441624
Alignment:
Q  111 gcgtgagttaacccacgcggcgttcgttaagtaatacagagtttaacacttgcgttactta 171  Q
    |||||||||||| ||||| || || |||||||||  |||||||||||||||||||||||||    
T  47441684 gcgtgagttaactcacgcagctttagttaagtaacgcagagtttaacacttgcgttactta 47441624  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 1031791 - 1031845
Alignment:
Q  181 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaattt 235  Q
    ||||||||| |||||||||||| |||||||||||||||||||||| | |||||||    
T  1031791 ttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaattt 1031845  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 7527068 - 7527134
Alignment:
Q  175 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacg 241  Q
    ||||| ||||||||| |||| |||| || |||||| ||||||||||||||| | |||||||| ||||    
T  7527068 cgttagttaactaacacataattttacacttgcgtgagttaactagcgcaagggtaaatttagaacg 7527134  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 4410234 - 4410282
Alignment:
Q  171 acagcgttaattaactaacgcatagtttttcaattgcgttagttaacta 219  Q
    ||||||||| ||||||||  ||||||||| || ||||||||||||||||    
T  4410234 acagcgttagttaactaatacatagttttacacttgcgttagttaacta 4410282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 35018739 - 35018787
Alignment:
Q  172 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactag 220  Q
    |||||||| |||| |||||||||||||| || |||||| ||||||||||    
T  35018739 cagcgttagttaaataacgcatagttttacacttgcgtgagttaactag 35018787  T

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Target: scaffold0001 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 185488 - 185436
Alignment:
Q  172 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgca 224  Q
    |||||||| ||||||||||||||||||| || |||||||||||||||| ||||    
T  185488 cagcgttagttaactaacgcatagttttacacttgcgttagttaactaacgca 185436  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 30842114 - 30842166
Alignment:
Q  172 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgca 224  Q
    |||||||| ||||||||||||||| ||| ||||| ||||||||||||||||||    
T  30842114 cagcgttagttaactaacgcataggtttacaattacgttagttaactagcgca 30842166  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 46637060 - 46637120
Alignment:
Q  175 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaattt 235  Q
    ||||| ||||||| ||||||||||| || ||||||||||||||||||| || |||||||||    
T  46637060 cgttacttaactagcgcatagttttacatttgcgttagttaactagcgtaaggataaattt 46637120  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 46183048 - 46182981
Alignment:
Q  174 gcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacg 241  Q
    |||||| |||||||||||||| |||| || |||||||| ||||||||||||| | ||||||| |||||    
T  46183048 gcgttagttaactaacgcataattttacacttgcgttatttaactagcgcaagggtaaatttgaaacg 46182981  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 20513562 - 20513508
Alignment:
Q  171 acagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaa 225  Q
    ||||||||| ||||||| ||||||||||| || |||||||||||||||| |||||    
T  20513562 acagcgttagttaactatcgcatagttttacacttgcgttagttaactaacgcaa 20513508  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 5848090 - 5848153
Alignment:
Q  172 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaattt 235  Q
    |||||||| ||||||| ||||||||||| || || ||||||||||||||||||| | |||||||    
T  5848090 cagcgttacttaactagcgcatagttttacacttacgttagttaactagcgcaagggtaaattt 5848153  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 19380219 - 19380272
Alignment:
Q  172 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaa 225  Q
    |||||||| ||||||||||||||  ||| || ||||||||||||||||||||||    
T  19380219 cagcgttagttaactaacgcatacatttacacttgcgttagttaactagcgcaa 19380272  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 187267 - 187310
Alignment:
Q  181 ttaactaacgcatagtttttcaattgcgttagttaactagcgca 224  Q
    ||||||||||||||||||| || |||||||||||||||| ||||    
T  187267 ttaactaacgcatagttttacacttgcgttagttaactaacgca 187310  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 11816083 - 11816149
Alignment:
Q  175 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacg 241  Q
    ||||| |||||||  |||||||||| || |||||| ||||||||||||||| | ||||||| |||||    
T  11816083 cgttagttaactagtgcatagttttacacttgcgtgagttaactagcgcaagggtaaatttgaaacg 11816149  T

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Target: scaffold0010 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 28649 - 28599
Alignment:
Q  174 gcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgca 224  Q
    |||||| |||||||||||||| |||| || |||||||||||||||| ||||    
T  28649 gcgttagttaactaacgcataattttacacttgcgttagttaactaacgca 28599  T

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Target: scaffold0015 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 33592 - 33636
Alignment:
Q  175 cgttaattaactaacgcatagtttttcaattgcgttagttaacta 219  Q
    ||||| ||||||||||||| ||||| || ||||||||||||||||    
T  33592 cgttagttaactaacgcattgttttacacttgcgttagttaacta 33636  T

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