View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5749_low_27 (Length: 266)

Name: NF5749_low_27
Description: NF5749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5749_low_27
NF5749_low_27
[»] chr3 (13 HSPs)
chr3 (1-258)||(36870953-36871210)
chr3 (195-250)||(6303589-6303644)
chr3 (195-250)||(10099922-10099977)
chr3 (195-250)||(10612625-10612680)
chr3 (195-246)||(10897287-10897338)
chr3 (195-250)||(22625827-22625882)
chr3 (196-251)||(31151701-31151755)
chr3 (197-250)||(10093923-10093976)
chr3 (197-250)||(10200805-10200858)
chr3 (21-53)||(21531205-21531237)
chr3 (187-251)||(28412860-28412923)
chr3 (21-53)||(35167146-35167178)
chr3 (197-250)||(48390152-48390207)
[»] chr4 (16 HSPs)
chr4 (196-250)||(4885149-4885203)
chr4 (14-53)||(45550982-45551021)
chr4 (196-250)||(8529547-8529601)
chr4 (196-250)||(16688793-16688847)
chr4 (196-250)||(18587245-18587299)
chr4 (197-250)||(15831425-15831478)
chr4 (195-250)||(15312595-15312651)
chr4 (197-250)||(16489628-16489681)
chr4 (195-251)||(18311213-18311270)
chr4 (195-251)||(18409190-18409247)
chr4 (199-247)||(25358073-25358122)
chr4 (195-250)||(4558585-4558641)
chr4 (195-250)||(11853843-11853899)
chr4 (195-231)||(16185684-16185720)
chr4 (21-53)||(34743394-34743426)
chr4 (195-231)||(47078728-47078764)
[»] chr2 (12 HSPs)
chr2 (193-250)||(37170603-37170660)
chr2 (195-250)||(28570252-28570307)
chr2 (195-250)||(39680323-39680379)
chr2 (195-250)||(45680000-45680056)
chr2 (196-250)||(17462714-17462768)
chr2 (195-250)||(20054608-20054665)
chr2 (197-250)||(39687267-39687321)
chr2 (197-250)||(22712374-22712426)
chr2 (197-250)||(27517491-27517543)
chr2 (197-246)||(33670817-33670866)
chr2 (192-251)||(19007996-19008056)
chr2 (197-250)||(20049866-20049921)
[»] chr7 (11 HSPs)
chr7 (195-250)||(25351630-25351685)
chr7 (195-250)||(25405692-25405747)
chr7 (196-250)||(7464364-7464418)
chr7 (195-250)||(3324635-3324691)
chr7 (196-250)||(15540843-15540898)
chr7 (196-250)||(44512362-44512417)
chr7 (197-250)||(3319869-3319923)
chr7 (197-250)||(6067048-6067101)
chr7 (195-247)||(7349115-7349167)
chr7 (195-247)||(7351489-7351541)
chr7 (21-53)||(43313904-43313936)
[»] chr1 (3 HSPs)
chr1 (195-250)||(9522003-9522058)
chr1 (19-52)||(50134884-50134917)
chr1 (194-250)||(9526743-9526799)
[»] scaffold1050 (1 HSPs)
scaffold1050 (196-250)||(2918-2972)
[»] chr5 (5 HSPs)
chr5 (196-250)||(42238535-42238589)
chr5 (199-250)||(28786677-28786728)
chr5 (197-250)||(1171089-1171142)
chr5 (197-250)||(1240707-1240760)
chr5 (195-247)||(40223046-40223099)
[»] scaffold0131 (1 HSPs)
scaffold0131 (197-250)||(17771-17824)
[»] chr8 (11 HSPs)
chr8 (197-250)||(25684919-25684972)
chr8 (195-250)||(16757108-16757164)
chr8 (195-250)||(28328185-28328241)
chr8 (195-250)||(28895780-28895834)
chr8 (200-250)||(4812336-4812386)
chr8 (197-250)||(16752374-16752428)
chr8 (197-251)||(28251410-28251464)
chr8 (197-250)||(28332908-28332962)
chr8 (197-246)||(591077-591126)
chr8 (196-252)||(3874433-3874488)
chr8 (21-53)||(17593876-17593908)
[»] chr6 (12 HSPs)
chr6 (197-250)||(3577338-3577391)
chr6 (197-250)||(25465754-25465807)
chr6 (197-250)||(31248544-31248597)
chr6 (195-250)||(17694699-17694754)
chr6 (195-250)||(22351702-22351756)
chr6 (195-246)||(25941951-25942002)
chr6 (197-251)||(3027703-3027756)
chr6 (197-251)||(5273055-5273109)
chr6 (197-250)||(13883752-13883806)
chr6 (196-250)||(35201156-35201210)
chr6 (195-250)||(13879016-13879072)
chr6 (197-258)||(28037576-28037638)
[»] scaffold0209 (1 HSPs)
scaffold0209 (195-246)||(16883-16934)
[»] scaffold0006 (1 HSPs)
scaffold0006 (197-250)||(231393-231445)
[»] scaffold0256 (1 HSPs)
scaffold0256 (195-250)||(16605-16658)


Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 36870953 - 36871210
Alignment:
Q  1 cttgcatgaggtttaaacatataaatatgattaacataaacatatcaaaacaaagggacaatgaacaagtggacaatgttaacaccaacatcttacttat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36870953 cttgcatgaggtttaaacatataaatatgattaacataaacatatcaaaacaaagggacaatgaacaagtggacaatgttaacaccaacatcttacttat 36871052  T
Q  101 aagcttcaggtacttctggattgattggaactaaacttgtgttaattaatagctgtcaaagaaacacctgaaaaagaacatattcaacaatgagattgtt 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36871053 aagcttcaggtacttctggattgatcggaactaaacttgtgttaattaatagctgtcaaagaaacacctgaaaaagaacatattcaacaatgagattgtt 36871152  T
Q  201 gtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaagaataatc 258  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  36871153 gtgaattcgttgaaaaaatcacaccgataaatacttgatgtgtggagcaagaataatc 36871210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 6303644 - 6303589
Alignment:
Q  195 attgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    ||||||||||||||||||| |||| |||||| ||||| | ||||||||||||||||    
T  6303644 attgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggagcaa 6303589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 10099922 - 10099977
Alignment:
Q  195 attgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    ||||||||||||||||||| |||| |||||| ||||| | ||||||||||||||||    
T  10099922 attgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggagcaa 10099977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 10612625 - 10612680
Alignment:
Q  195 attgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    |||||| |||||||||||| |||| |||||| ||||| | ||||||||||||||||    
T  10612625 attgttatgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggagcaa 10612680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 246
Target Start/End: Complemental strand, 10897338 - 10897287
Alignment:
Q  195 attgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtgga 246  Q
    ||||||||||||||||||| |||| |||||| ||||| | ||||||||||||    
T  10897338 attgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtgga 10897287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 22625827 - 22625882
Alignment:
Q  195 attgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    ||||||||||||||||||| |||| |||||| ||||| | |||||| |||||||||    
T  22625827 attgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgtgtggagcaa 22625882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 31151755 - 31151701
Alignment:
Q  196 ttgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaag 251  Q
    |||||||||||||| ||||||| ||||||| ||||||| |||||| ||||||||||    
T  31151755 ttgttgtgaattcgatgaaaaa-tcacaccaataaatacttgatgtgtggagcaag 31151701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 10093923 - 10093976
Alignment:
Q  197 tgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    ||||||||||||||||| |||| |||||| ||||| | ||||||| ||||||||    
T  10093923 tgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcatggagcaa 10093976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 10200805 - 10200858
Alignment:
Q  197 tgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    ||||||||||||||||| |||| |||||| ||||| | ||||||| ||||||||    
T  10200805 tgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcatggagcaa 10200858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 21531237 - 21531205
Alignment:
Q  21 ataaatatgattaacataaacatatcaaaacaa 53  Q
    ||||||| |||||||||||||||||||||||||    
T  21531237 ataaatacgattaacataaacatatcaaaacaa 21531205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 251
Target Start/End: Original strand, 28412860 - 28412923
Alignment:
Q  187 acaatgagattgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaag 251  Q
    ||||||| ||||||||||||||| |||||||| |||||| ||||  | |||||| ||||||||||    
T  28412860 acaatgatattgttgtgaattcgatgaaaaaa-cacaccaataacaacttgatgtgtggagcaag 28412923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 35167178 - 35167146
Alignment:
Q  21 ataaatatgattaacataaacatatcaaaacaa 53  Q
    ||||||| |||||||||||||||||||||||||    
T  35167178 ataaatacgattaacataaacatatcaaaacaa 35167146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 48390152 - 48390207
Alignment:
Q  197 tgttgtgaattcgttgaaaaaatcacaccgataaataa--ttgatgcgtggagcaa 250  Q
    ||||||||||||||||| ||| ||||||| ||||| ||  ||||||||||||||||    
T  48390152 tgttgtgaattcgttgagaaagtcacaccaataaaaaaacttgatgcgtggagcaa 48390207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 4885203 - 4885149
Alignment:
Q  196 ttgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    ||||||||||||||||| |||||||||||| ||||| | ||||||||||||||||    
T  4885203 ttgttgtgaattcgttgtaaaaatcacaccaataaaaacttgatgcgtggagcaa 4885149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 45551021 - 45550982
Alignment:
Q  14 taaacatataaatatgattaacataaacatatcaaaacaa 53  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  45551021 taaacatataaatatgattaacataaacatatcataacaa 45550982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 8529601 - 8529547
Alignment:
Q  196 ttgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    |||||||||||||||||| |||| |||||| ||||| | ||||||||||||||||    
T  8529601 ttgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggagcaa 8529547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 16688793 - 16688847
Alignment:
Q  196 ttgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    |||||||||||||||||| |||| |||||| ||||| | ||||||||||||||||    
T  16688793 ttgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggagcaa 16688847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 18587299 - 18587245
Alignment:
Q  196 ttgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    |||||||||||||||||| |||| |||||| ||||| | ||||||||||||||||    
T  18587299 ttgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggagcaa 18587245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 15831478 - 15831425
Alignment:
Q  197 tgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    ||||||||||||||||| |||| |||||| ||||| | ||||||||||||||||    
T  15831478 tgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggagcaa 15831425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 15312651 - 15312595
Alignment:
Q  195 attgttgtgaattcgttgaaaaaatcacaccgataaataa-ttgatgcgtggagcaa 250  Q
    ||||||||||||||||||| |||| |||||| ||||| || ||||||||||||||||    
T  15312651 attgttgtgaattcgttgagaaaaccacaccaataaaaaacttgatgcgtggagcaa 15312595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 16489681 - 16489628
Alignment:
Q  197 tgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    ||||||||||||||||| |||| |||||| ||||| | |||||| |||||||||    
T  16489681 tgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgtgtggagcaa 16489628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 18311213 - 18311270
Alignment:
Q  195 attgttgtgaattcgttgaaaaaatcacaccgataa-ataattgatgcgtggagcaag 251  Q
    ||||||||||||||| ||||||||||||||| |||| | | |||||| ||||||||||    
T  18311213 attgttgtgaattcgatgaaaaaatcacaccaataataaacttgatgtgtggagcaag 18311270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 18409190 - 18409247
Alignment:
Q  195 attgttgtgaattcgttgaaaaaatcacaccgataa-ataattgatgcgtggagcaag 251  Q
    ||||||||||||||| ||||||||||||||| |||| | | |||||| ||||||||||    
T  18409190 attgttgtgaattcgatgaaaaaatcacaccaataataaacttgatgtgtggagcaag 18409247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 25358122 - 25358073
Alignment:
Q  199 ttgtgaattcgttgaaaaaatcacaccgat-aaataattgatgcgtggag 247  Q
    ||||||||||||||||||||||||||| || ||||| |||||| ||||||    
T  25358122 ttgtgaattcgttgaaaaaatcacaccaataaaatacttgatgtgtggag 25358073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 4558641 - 4558585
Alignment:
Q  195 attgttgtgaattcgttgaaaaaatcacaccgataa-ataattgatgcgtggagcaa 250  Q
    ||||||||||||||||||| |||| |||||| |||| | | ||||||||||||||||    
T  4558641 attgttgtgaattcgttgagaaaaccacaccaataataaacttgatgcgtggagcaa 4558585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 11853899 - 11853843
Alignment:
Q  195 attgttgtgaattcgttgaaaaaatcacaccgataaataa-ttgatgcgtggagcaa 250  Q
    ||||||||||||||||||| |||| |||||| ||||| || |||||| |||||||||    
T  11853899 attgttgtgaattcgttgagaaaaccacaccaataaaaaacttgatgggtggagcaa 11853843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 16185684 - 16185720
Alignment:
Q  195 attgttgtgaattcgttgaaaaaatcacaccgataaa 231  Q
    |||||||||||||||||||||| |||||||| |||||    
T  16185684 attgttgtgaattcgttgaaaagatcacaccaataaa 16185720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 34743426 - 34743394
Alignment:
Q  21 ataaatatgattaacataaacatatcaaaacaa 53  Q
    ||||||| |||||||||||||||||||||||||    
T  34743426 ataaatacgattaacataaacatatcaaaacaa 34743394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 47078764 - 47078728
Alignment:
Q  195 attgttgtgaattcgttgaaaaaatcacaccgataaa 231  Q
    |||||||||||||| |||||||||||||||| |||||    
T  47078764 attgttgtgaattccttgaaaaaatcacaccaataaa 47078728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 37170603 - 37170660
Alignment:
Q  193 agattgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    ||||||||||||||||||||  ||||||||||| ||||| | ||||||||||||||||    
T  37170603 agattgttgtgaattcgttgtgaaaatcacaccaataaaaacttgatgcgtggagcaa 37170660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 28570252 - 28570307
Alignment:
Q  195 attgttgtgaattcgttgaaaaaatcacaccgataa-ataattgatgcgtggagcaa 250  Q
    ||||||||||||||||| |||||||||||||||||| ||| |||||| |||||||||    
T  28570252 attgttgtgaattcgtt-aaaaaatcacaccgataatatatttgatgtgtggagcaa 28570307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 39680379 - 39680323
Alignment:
Q  195 attgttgtgaattcgttga-aaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    ||||||||||||||||||| ||||| |||||| ||||| | ||||||||||||||||    
T  39680379 attgttgtgaattcgttgagaaaaaccacaccaataaaaacttgatgcgtggagcaa 39680323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 45680056 - 45680000
Alignment:
Q  195 attgttgtgaattcgttga-aaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    ||||||||||||||||||| ||||| |||||| ||||| | ||||||||||||||||    
T  45680056 attgttgtgaattcgttgagaaaaaccacaccaataaaaacttgatgcgtggagcaa 45680000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 17462768 - 17462714
Alignment:
Q  196 ttgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    |||||||||||||||||| |||| |||||| ||||| | |||||| |||||||||    
T  17462768 ttgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgtgtggagcaa 17462714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 20054608 - 20054665
Alignment:
Q  195 attgttgtgaattcgttgaaaaaatcacaccgataaataa--ttgatgcgtggagcaa 250  Q
    ||||||||||||||||||| |||| |||||| ||||| ||  ||||||||||||||||    
T  20054608 attgttgtgaattcgttgagaaaaccacaccaataaaaaaacttgatgcgtggagcaa 20054665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 39687321 - 39687267
Alignment:
Q  197 tgttgtgaattcgttga-aaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    ||||||||||||||||| ||||| |||||| ||||| | ||||||||||||||||    
T  39687321 tgttgtgaattcgttgagaaaaaccacaccaataaaaacttgatgcgtggagcaa 39687267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 22712374 - 22712426
Alignment:
Q  197 tgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    ||||||||||||||||| |||| |||||| ||||| | ||||||||||||||||    
T  22712374 tgttgtgaattcgttgagaaaaccacaccaataaa-acttgatgcgtggagcaa 22712426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 27517491 - 27517543
Alignment:
Q  197 tgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    ||||||||||||||||| |||| |||||| ||||| | ||||||||||||||||    
T  27517491 tgttgtgaattcgttgagaaaaccacaccaataaa-acttgatgcgtggagcaa 27517543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 33670817 - 33670866
Alignment:
Q  197 tgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtgga 246  Q
    ||||||||||||||||| |||| |||||| ||||| | ||||||||||||    
T  33670817 tgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtgga 33670866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 19008056 - 19007996
Alignment:
Q  192 gagattgttgtgaattcgttgaaaaaatcacaccgataa-ataattgatgcgtggagcaag 251  Q
    |||| ||||||||||||| ||||||||||||||| |||| | | |||||| ||||||||||    
T  19008056 gagactgttgtgaattcgatgaaaaaatcacaccaataacaaacttgatgtgtggagcaag 19007996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 20049866 - 20049921
Alignment:
Q  197 tgttgtgaattcgttgaaaaaatcacaccgataaataa--ttgatgcgtggagcaa 250  Q
    ||||||||||||||||| |||| |||||| ||||| ||  ||||||||||||||||    
T  20049866 tgttgtgaattcgttgagaaaaccacaccaataaaaaaacttgatgcgtggagcaa 20049921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 25351685 - 25351630
Alignment:
Q  195 attgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    ||||||||||||||||||| |||| |||||| ||||| | ||||||||||||||||    
T  25351685 attgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggagcaa 25351630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 25405747 - 25405692
Alignment:
Q  195 attgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    ||||||||||||||||||| |||| |||||| ||||| | ||||||||||||||||    
T  25405747 attgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggagcaa 25405692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 7464364 - 7464418
Alignment:
Q  196 ttgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    |||||||||||||||||| |||| |||||| ||||| | ||||||||||||||||    
T  7464364 ttgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggagcaa 7464418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 3324635 - 3324691
Alignment:
Q  195 attgttgtgaattcgttga-aaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    ||||||||||||||||||| ||||| |||||| ||||| | ||||||||||||||||    
T  3324635 attgttgtgaattcgttgagaaaaaccacaccaataaaaacttgatgcgtggagcaa 3324691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 15540843 - 15540898
Alignment:
Q  196 ttgttgtgaattcgttga-aaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    |||||||||||||||||| ||||| |||||| ||||| | ||||||||||||||||    
T  15540843 ttgttgtgaattcgttgagaaaaaccacaccaataaaaacttgatgcgtggagcaa 15540898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 44512362 - 44512417
Alignment:
Q  196 ttgttgtgaattcgttgaaaaaatcacaccgataaataa-ttgatgcgtggagcaa 250  Q
    |||||||||||||||||| |||| |||||| ||||| || ||||||||||||||||    
T  44512362 ttgttgtgaattcgttgagaaaaacacaccaataaaaaacttgatgcgtggagcaa 44512417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 3319869 - 3319923
Alignment:
Q  197 tgttgtgaattcgttga-aaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    ||||||||||||||||| ||||| |||||| ||||| | ||||||||||||||||    
T  3319869 tgttgtgaattcgttgagaaaaaccacaccaataaaaacttgatgcgtggagcaa 3319923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 6067048 - 6067101
Alignment:
Q  197 tgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    |||||||| |||| ||||||||||||||| | ||||| |||||| |||||||||    
T  6067048 tgttgtgatttcggtgaaaaaatcacaccaacaaatacttgatgtgtggagcaa 6067101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 7349115 - 7349167
Alignment:
Q  195 attgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggag 247  Q
    ||||||||||||||| ||||||||||||||| ||||  | |||||| ||||||    
T  7349115 attgttgtgaattcgatgaaaaaatcacaccaataacaacttgatgtgtggag 7349167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 7351489 - 7351541
Alignment:
Q  195 attgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggag 247  Q
    ||||||||||||||| ||||||||||||||| ||||  | |||||| ||||||    
T  7351489 attgttgtgaattcgatgaaaaaatcacaccaataacaacttgatgtgtggag 7351541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 43313904 - 43313936
Alignment:
Q  21 ataaatatgattaacataaacatatcaaaacaa 53  Q
    ||||||| |||||||||||||||||||||||||    
T  43313904 ataaatacgattaacataaacatatcaaaacaa 43313936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 9522058 - 9522003
Alignment:
Q  195 attgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    ||||||||||||||||||| |||| |||||| ||||| | ||||||||||||||||    
T  9522058 attgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggagcaa 9522003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 50134884 - 50134917
Alignment:
Q  19 atataaatatgattaacataaacatatcaaaaca 52  Q
    ||||||||||||||||||||||||||||||||||    
T  50134884 atataaatatgattaacataaacatatcaaaaca 50134917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 9526799 - 9526743
Alignment:
Q  194 gattgttgtgaattcgttga-aaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    |||||||||||||||||||| |||||||||||| ||||| | |||||| |||||||||    
T  9526799 gattgttgtgaattcgttgagaaaaatcacaccaataaa-acttgatgtgtggagcaa 9526743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1050 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1050
Description:

Target: scaffold1050; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 2918 - 2972
Alignment:
Q  196 ttgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    |||||||||||||||||| |||| |||||| ||||| | ||||||||||||||||    
T  2918 ttgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggagcaa 2972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 42238589 - 42238535
Alignment:
Q  196 ttgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    ||||||||||||||||| ||||| |||||| ||||| | ||||||||||||||||    
T  42238589 ttgttgtgaattcgttgtaaaaaccacaccaataaaaacttgatgcgtggagcaa 42238535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 250
Target Start/End: Complemental strand, 28786728 - 28786677
Alignment:
Q  199 ttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    ||||||||||||||| |||| |||||| ||||| | ||||||||||||||||    
T  28786728 ttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggagcaa 28786677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 1171142 - 1171089
Alignment:
Q  197 tgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    ||||||||||||||||| |||| |||||| ||||| | |||||| |||||||||    
T  1171142 tgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgtgtggagcaa 1171089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 1240760 - 1240707
Alignment:
Q  197 tgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    |||||||||||||||||  ||| |||||| ||||| | ||||||||||||||||    
T  1240760 tgttgtgaattcgttgaggaaaccacaccaataaaaacttgatgcgtggagcaa 1240707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 40223099 - 40223046
Alignment:
Q  195 attgttgtgaattcgttg-aaaaaatcacaccgataaataattgatgcgtggag 247  Q
    |||||||||||||||||| |||||| |||||| ||||| | |||||||||||||    
T  40223099 attgttgtgaattcgttgtaaaaaaccacaccaataaaaatttgatgcgtggag 40223046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 17824 - 17771
Alignment:
Q  197 tgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    ||||||||||||||||| |||| |||||| ||||| | ||||||||||||||||    
T  17824 tgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggagcaa 17771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 25684972 - 25684919
Alignment:
Q  197 tgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    ||||||||||||||||| |||| |||||| ||||| | ||||||||||||||||    
T  25684972 tgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggagcaa 25684919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 16757108 - 16757164
Alignment:
Q  195 attgttgtgaattcgttga-aaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    ||||||||||||||||||| ||||| |||||| ||||| | ||||||||||||||||    
T  16757108 attgttgtgaattcgttgagaaaaaccacaccaataaaaacttgatgcgtggagcaa 16757164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 28328241 - 28328185
Alignment:
Q  195 attgttgtgaattcgttga-aaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    ||||||||||||||||||| ||||| |||||| ||||| | ||||||||||||||||    
T  28328241 attgttgtgaattcgttgagaaaaaccacaccaataaaaacttgatgcgtggagcaa 28328185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 28895834 - 28895780
Alignment:
Q  195 attgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    ||||||||||||||||||| |||| |||||| ||||| | ||||||||||||||||    
T  28895834 attgttgtgaattcgttgagaaaaccacaccaataaa-acttgatgcgtggagcaa 28895780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 250
Target Start/End: Original strand, 4812336 - 4812386
Alignment:
Q  200 tgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    |||||||||||||| |||| |||||| ||||| | ||||||||||||||||    
T  4812336 tgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggagcaa 4812386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 16752374 - 16752428
Alignment:
Q  197 tgttgtgaattcgttga-aaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    ||||||||||||||||| ||||| |||||| ||||| | ||||||||||||||||    
T  16752374 tgttgtgaattcgttgagaaaaaccacaccaataaaaacttgatgcgtggagcaa 16752428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 28251410 - 28251464
Alignment:
Q  197 tgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaag 251  Q
    ||||||||||||| ||||||||||||||| ||||  | |||||| ||||||||||    
T  28251410 tgttgtgaattcgatgaaaaaatcacaccaataacaacttgatgtgtggagcaag 28251464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 28332962 - 28332908
Alignment:
Q  197 tgttgtgaattcgttga-aaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    ||||||||||||||||| ||||| |||||| ||||| | ||||||||||||||||    
T  28332962 tgttgtgaattcgttgagaaaaaccacaccaataaaaacttgatgcgtggagcaa 28332908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 591126 - 591077
Alignment:
Q  197 tgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtgga 246  Q
    ||||||||||||||||| |||| |||||| ||||| | ||||||||||||    
T  591126 tgttgtgaattcgttgagaaaaccacaccaataaaaatttgatgcgtgga 591077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 3874488 - 3874433
Alignment:
Q  196 ttgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaaga 252  Q
    |||||||||||||||||| ||||||||||| ||||  | |||||| |||||||||||    
T  3874488 ttgttgtgaattcgttga-aaaatcacaccaataacaacttgatgtgtggagcaaga 3874433  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 17593876 - 17593908
Alignment:
Q  21 ataaatatgattaacataaacatatcaaaacaa 53  Q
    ||||||| |||||||||||||||||||||||||    
T  17593876 ataaatacgattaacataaacatatcaaaacaa 17593908  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 3577338 - 3577391
Alignment:
Q  197 tgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    ||||||||||||||||| |||| |||||| ||||| | ||||||||||||||||    
T  3577338 tgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggagcaa 3577391  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 25465754 - 25465807
Alignment:
Q  197 tgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    ||||||||||||||||| |||| |||||| ||||| | ||||||||||||||||    
T  25465754 tgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggagcaa 25465807  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 31248544 - 31248597
Alignment:
Q  197 tgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    ||||||||||||||||| |||| |||||| ||||| | ||||||||||||||||    
T  31248544 tgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggagcaa 31248597  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 17694699 - 17694754
Alignment:
Q  195 attgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    ||||||||||||||||||| |||| |||||| ||||| | |||||| |||||||||    
T  17694699 attgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgtgtggagcaa 17694754  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 22351702 - 22351756
Alignment:
Q  195 attgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    |||||||||||||||||| |||||||||||| ||||| | |||||| |||||||||    
T  22351702 attgttgtgaattcgttgtaaaaatcacaccaataaa-acttgatgtgtggagcaa 22351756  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 246
Target Start/End: Complemental strand, 25942002 - 25941951
Alignment:
Q  195 attgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtgga 246  Q
    ||||||||||||||||||| |||| |||||| ||||| | ||||||||||||    
T  25942002 attgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtgga 25941951  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 3027703 - 3027756
Alignment:
Q  197 tgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaag 251  Q
    ||||||||||||  |||||| |||||||||||||||| |||||| ||||||||||    
T  3027703 tgttgtgaattcaatgaaaa-atcacaccgataaatatttgatgtgtggagcaag 3027756  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 5273055 - 5273109
Alignment:
Q  197 tgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaag 251  Q
    ||||||||||||| ||||||||||||||| ||||  | |||||| ||||||||||    
T  5273055 tgttgtgaattcgatgaaaaaatcacaccaataacaacttgatgtgtggagcaag 5273109  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 13883806 - 13883752
Alignment:
Q  197 tgttgtgaattcgttgaaaaaatcacaccgataaataa-ttgatgcgtggagcaa 250  Q
    ||||||||||||||||| |||| |||||| ||||| || ||||||||||||||||    
T  13883806 tgttgtgaattcgttgagaaaaccacaccaataaaaaacttgatgcgtggagcaa 13883752  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 35201156 - 35201210
Alignment:
Q  196 ttgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    |||||||||||||||||| |||| |||||  ||||| | ||||||||||||||||    
T  35201156 ttgttgtgaattcgttgagaaaaccacactaataaaaacttgatgcgtggagcaa 35201210  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 13879072 - 13879016
Alignment:
Q  195 attgttgtgaattcgttga-aaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    ||||||||||||||||||| ||||| |||||| | ||| | ||||||||||||||||    
T  13879072 attgttgtgaattcgttgagaaaaaccacaccaaaaaaaacttgatgcgtggagcaa 13879016  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 258
Target Start/End: Original strand, 28037576 - 28037638
Alignment:
Q  197 tgttgtgaattcgttgaaaaaatcacaccgat--aaataattgatgcgtggagcaagaataatc 258  Q
    |||||||||||||||| |||||||||||| ||  ||||| |||||| ||||||||| |||||||    
T  28037576 tgttgtgaattcgttg-aaaaatcacaccaataaaaatacttgatgtgtggagcaaaaataatc 28037638  T

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Target: scaffold0209 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 16883 - 16934
Alignment:
Q  195 attgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtgga 246  Q
    ||||||||||||||||||| |||| |||||| ||||| | ||||||||||||    
T  16883 attgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtgga 16934  T

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Target: scaffold0006 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 231445 - 231393
Alignment:
Q  197 tgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    ||||||||||||||||| |||| |||||| ||||| | ||||||||||||||||    
T  231445 tgttgtgaattcgttgagaaaaccacaccaataaa-acttgatgcgtggagcaa 231393  T

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Target: scaffold0256 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 16658 - 16605
Alignment:
Q  195 attgttgtgaattcgttgaaaaaatcacaccgataaataattgatgcgtggagcaa 250  Q
    ||||||||||||||| ||||||  ||||||| ||||| | ||||||||||||||||    
T  16658 attgttgtgaattcgatgaaaa--tcacaccaataaaaacttgatgcgtggagcaa 16605  T

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