View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5749_low_28 (Length: 262)

Name: NF5749_low_28
Description: NF5749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5749_low_28
NF5749_low_28
[»] chr8 (3 HSPs)
chr8 (87-251)||(32793617-32793781)
chr8 (74-213)||(30155503-30155645)
chr8 (113-213)||(26936533-26936633)
[»] chr5 (9 HSPs)
chr5 (74-244)||(17077891-17078063)
chr5 (74-213)||(9476910-9477052)
chr5 (74-213)||(18253712-18253854)
chr5 (74-231)||(6218289-6218449)
chr5 (74-213)||(1588569-1588711)
chr5 (74-213)||(11493552-11493694)
chr5 (74-213)||(22965310-22965452)
chr5 (74-213)||(32100067-32100209)
chr5 (103-213)||(9785049-9785155)
[»] chr1 (6 HSPs)
chr1 (74-213)||(50650288-50650430)
chr1 (74-213)||(15731558-15731700)
chr1 (74-213)||(23435352-23435494)
chr1 (74-213)||(6469680-6469822)
chr1 (74-213)||(25989998-25990140)
chr1 (74-213)||(42927459-42927601)
[»] scaffold0029 (2 HSPs)
scaffold0029 (89-205)||(39624-39740)
scaffold0029 (89-205)||(46820-46936)
[»] chr3 (7 HSPs)
chr3 (74-213)||(2552660-2552802)
chr3 (74-213)||(4087656-4087798)
chr3 (74-213)||(46107106-46107248)
chr3 (74-213)||(8240097-8240239)
chr3 (74-213)||(39151093-39151235)
chr3 (74-213)||(39258811-39258953)
chr3 (140-213)||(9737205-9737280)
[»] chr6 (3 HSPs)
chr6 (118-211)||(9457496-9457589)
chr6 (75-213)||(2355281-2355422)
chr6 (113-213)||(32858720-32858820)
[»] chr7 (4 HSPs)
chr7 (74-213)||(37549836-37549978)
chr7 (74-213)||(41851477-41851619)
chr7 (74-213)||(42883115-42883257)
chr7 (170-232)||(35709068-35709129)
[»] chr4 (2 HSPs)
chr4 (74-213)||(732251-732393)
chr4 (74-213)||(8436358-8436500)
[»] chr2 (3 HSPs)
chr2 (74-213)||(10254796-10254938)
chr2 (74-213)||(36371108-36371250)
chr2 (99-160)||(33527429-33527490)


Alignment Details
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 87 - 251
Target Start/End: Complemental strand, 32793781 - 32793617
Alignment:
Q  87 acttttattcccaaggaagtggatgagaataaaaggttctcatgtaaatagtaataaaattgaaataactatccatataaccactatcacaaataattcc 186  Q
    |||||||||  |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  32793781 acttttattttcaaggaagtggatgggaataaaaggttcccatgtaaatagtaataaaattgaaataactgctcatataaccactatcacaaataattcc 32793682  T
Q  187 catgaatctcacaattatttaccaaacccaaattttaaagaatacccaagaagatgatggccatc 251  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||||||| | |||| |||||    
T  32793681 catgaatctgacaattatttaccaaatccaaattttaaagaatacccaagaataagatgcccatc 32793617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 213
Target Start/End: Original strand, 30155503 - 30155645
Alignment:
Q  74 cttccacttacccac--ttttattcccaaggaa-gtggatgagaataaaaggttctcatgtaaatagtaataaaattgaaataactatccatataaccac 170  Q
    ||||||||||||||   |||||||||||| ||| ||||  | ||||||||| ||| ||||||||| ||| |||||| |||||||||| ||||||| ||||    
T  30155503 cttccacttacccatgattttattcccaaagaaagtgggcgggaataaaagattcccatgtaaatggtactaaaatggaaataactacccatatacccac 30155602  T
Q  171 tatcacaaataattcccatgaatctcacaattatttaccaaac 213  Q
    ||||||||| ||||||||||||||| |||||||||||||||||    
T  30155603 tatcacaaacaattcccatgaatctgacaattatttaccaaac 30155645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 113 - 213
Target Start/End: Original strand, 26936533 - 26936633
Alignment:
Q  113 gaataaaaggttctcatgtaaatagtaataaaattgaaataactatccatataaccactatcacaaataattcccatgaatctcacaattatttaccaaa 212  Q
    ||||||||| ||| ||||||||| ||| |||||| |||||| ||| ||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||    
T  26936533 gaataaaagattcccatgtaaatggtactaaaatggaaatagctacccatatacccactatcacaaacaattcccatgaatctgacaattatttaccaaa 26936632  T
Q  213 c 213  Q
    |    
T  26936633 c 26936633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 74 - 244
Target Start/End: Original strand, 17077891 - 17078063
Alignment:
Q  74 cttccacttacccac--ttttattcccaaggaagtggatgagaataaaaggttctcatgtaaatagtaataaaatt-gaaataactatccatataaccac 170  Q
    ||||||||||||||   ||||||||| ||||||||||||| ||||||||||||| ||||||||| ||||||||||| |||||||||| ||||||| ||||    
T  17077891 cttccacttacccatgattttattcc-aaggaagtggatgggaataaaaggttcccatgtaaattgtaataaaatttgaaataactacccatatacccac 17077989  T
Q  171 tatcacaaataattcccatgaatctcacaattatttaccaaacccaaattttaaagaatacccaagaagatgat 244  Q
    ||||| |||||||| |||||||||| ||||||||||||||||| |||||||||||| ||||||| ||| |||||    
T  17077990 tatcaaaaataattgccatgaatctgacaattatttaccaaacacaaattttaaagtatacccaggaatatgat 17078063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 74 - 213
Target Start/End: Complemental strand, 9477052 - 9476910
Alignment:
Q  74 cttccacttacccac--ttttattcccaaggaa-gtggatgagaataaaaggttctcatgtaaatagtaataaaattgaaataactatccatataaccac 170  Q
    ||||||||||||||   |||||||||||| ||| ||||| | ||||||||| ||| ||||||||| ||| |||||| |||||||||| ||||||| ||||    
T  9477052 cttccacttacccatgattttattcccaaagaaagtggacgggaataaaagattcccatgtaaatggtactaaaatggaaataactacccatatacccac 9476953  T
Q  171 tatcacaaataattcccatgaatctcacaattatttaccaaac 213  Q
    ||||||||| ||||||||||||||| |||||||||||||||||    
T  9476952 tatcacaaacaattcccatgaatctgacaattatttaccaaac 9476910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 74 - 213
Target Start/End: Complemental strand, 18253854 - 18253712
Alignment:
Q  74 cttccacttacccac--ttttattcccaaggaa-gtggatgagaataaaaggttctcatgtaaatagtaataaaattgaaataactatccatataaccac 170  Q
    ||||||||||||||   |||||||||||| ||| ||||  | ||||||||| ||||||||||||| ||| |||||| |||||||||| ||||||| ||||    
T  18253854 cttccacttacccatgattttattcccaaagaaagtgggcgggaataaaagattctcatgtaaatggtactaaaatggaaataactacccatatacccac 18253755  T
Q  171 tatcacaaataattcccatgaatctcacaattatttaccaaac 213  Q
    ||||||||| ||||||||||||||| |||||||||||||||||    
T  18253754 tatcacaaacaattcccatgaatctgacaattatttaccaaac 18253712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 74 - 231
Target Start/End: Complemental strand, 6218449 - 6218289
Alignment:
Q  74 cttccacttacccac--ttttattcccaaggaa-gtggatgagaataaaaggttctcatgtaaatagtaataaaattgaaataactatccatataaccac 170  Q
    ||||||||||||||   |||||||||||| ||| ||||  | ||||||||| ||| ||||||||| ||| |||||| |||||||||| ||||||| ||||    
T  6218449 cttccacttacccatgattttattcccaaagaaagtgggcgggaataaaagattcccatgtaaatggtactaaaatggaaataactacccatatacccac 6218350  T
Q  171 tatcacaaataattcccatgaatctcacaattatttaccaaacccaaattttaaagaatac 231  Q
    ||||||||| ||||||||||||||| ||||||||||||||||| ||| |||| || |||||    
T  6218349 tatcacaaacaattcccatgaatctgacaattatttaccaaacacaattttttaaaaatac 6218289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 213
Target Start/End: Complemental strand, 1588711 - 1588569
Alignment:
Q  74 cttccacttacccac--ttttattcccaaggaa-gtggatgagaataaaaggttctcatgtaaatagtaataaaattgaaataactatccatataaccac 170  Q
    ||||||||||||||   |||||||||||| ||| ||||  | ||||||||| ||| ||||||||| ||| |||||| |||||||||| ||||||| ||||    
T  1588711 cttccacttacccatgattttattcccaaagaaagtgggcgggaataaaagattcccatgtaaatggtactaaaatggaaataactacccatatacccac 1588612  T
Q  171 tatcacaaataattcccatgaatctcacaattatttaccaaac 213  Q
    ||||||||| ||||||||||||||| |||||||||||||||||    
T  1588611 tatcacaaacaattcccatgaatctgacaattatttaccaaac 1588569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 213
Target Start/End: Original strand, 11493552 - 11493694
Alignment:
Q  74 cttccacttacccac--ttttattcccaaggaa-gtggatgagaataaaaggttctcatgtaaatagtaataaaattgaaataactatccatataaccac 170  Q
    ||||||||||||||   |||||||||||| ||| ||||  | ||||||||| ||| ||||||||| ||| |||||| |||||||||| ||||||| ||||    
T  11493552 cttccacttacccatgattttattcccaaagaaagtgggcgggaataaaagattcccatgtaaatggtactaaaatggaaataactacccatatacccac 11493651  T
Q  171 tatcacaaataattcccatgaatctcacaattatttaccaaac 213  Q
    ||||||||| ||||||||||||||| |||||||||||||||||    
T  11493652 tatcacaaacaattcccatgaatctgacaattatttaccaaac 11493694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 213
Target Start/End: Complemental strand, 22965452 - 22965310
Alignment:
Q  74 cttccacttacccac--ttttattcccaaggaa-gtggatgagaataaaaggttctcatgtaaatagtaataaaattgaaataactatccatataaccac 170  Q
    ||||||||||||||   |||||||||||| ||| ||||  | ||||||||| ||| ||||||||| ||| |||||| |||||||||| ||||||| ||||    
T  22965452 cttccacttacccatgattttattcccaaagaaagtgggcgggaataaaagattcccatgtaaatggtactaaaatggaaataactacccatatacccac 22965353  T
Q  171 tatcacaaataattcccatgaatctcacaattatttaccaaac 213  Q
    ||||||||| ||||||||||||||| |||||||||||||||||    
T  22965352 tatcacaaacaattcccatgaatctgacaattatttaccaaac 22965310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 213
Target Start/End: Complemental strand, 32100209 - 32100067
Alignment:
Q  74 cttccacttacccac--ttttattcccaaggaa-gtggatgagaataaaaggttctcatgtaaatagtaataaaattgaaataactatccatataaccac 170  Q
    ||||||||||||||   |||||||||||| ||| ||||  | ||||||||| ||| ||||||||| ||| |||||| |||||||||| ||||||| ||||    
T  32100209 cttccacttacccatgattttattcccaaagaaagtgggcgggaataaaagattcccatgtaaatggtactaaaatggaaataactacccatatacccac 32100110  T
Q  171 tatcacaaataattcccatgaatctcacaattatttaccaaac 213  Q
    ||||||||| ||||||||||||||| |||||||||||||||||    
T  32100109 tatcacaaacaattcccatgaatctgacaattatttaccaaac 32100067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 103 - 213
Target Start/End: Complemental strand, 9785155 - 9785049
Alignment:
Q  103 aagtggatgagaataaaaggttctcatgtaaatagtaataaaattgaaataactatccatataaccactatcacaaataattcccatgaatctcacaatt 202  Q
    ||||||||| |||||||| |||||||| ||||||     |||||| ||||||||||||||||| || ||||||||||||||| |||| |||||  |||||    
T  9785155 aagtggatgggaataaaaagttctcatataaatac----aaaattaaaataactatccatatacccgctatcacaaataatttccataaatctatcaatt 9785060  T
Q  203 atttaccaaac 213  Q
    ||||| |||||    
T  9785059 atttatcaaac 9785049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 74 - 213
Target Start/End: Original strand, 50650288 - 50650430
Alignment:
Q  74 cttccacttacccac--ttttattcccaaggaa-gtggatgagaataaaaggttctcatgtaaatagtaataaaattgaaataactatccatataaccac 170  Q
    ||||||||||||||   |||||||||||| ||| ||||| | ||||||||| ||||||||||||| ||| |||||| |||||||||| ||||||| ||||    
T  50650288 cttccacttacccatgattttattcccaaagaaagtggacgggaataaaagattctcatgtaaatggtactaaaatggaaataactacccatatacccac 50650387  T
Q  171 tatcacaaataattcccatgaatctcacaattatttaccaaac 213  Q
    ||||||||| ||||||||||||||| |||||||||||||||||    
T  50650388 tatcacaaacaattcccatgaatctgacaattatttaccaaac 50650430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 74 - 213
Target Start/End: Complemental strand, 15731700 - 15731558
Alignment:
Q  74 cttccacttacccac--ttttattcccaaggaa-gtggatgagaataaaaggttctcatgtaaatagtaataaaattgaaataactatccatataaccac 170  Q
    ||||||||||||||   |||||||||||| ||| ||||| | ||||||||| ||| ||||||||| ||| |||||| |||||||||| ||||||| ||||    
T  15731700 cttccacttacccatgattttattcccaaagaaagtggacgggaataaaagattcccatgtaaatggtactaaaatggaaataactacccatatacccac 15731601  T
Q  171 tatcacaaataattcccatgaatctcacaattatttaccaaac 213  Q
    ||||||||| ||||||||||||||| |||||||||||||||||    
T  15731600 tatcacaaacaattcccatgaatctgacaattatttaccaaac 15731558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 74 - 213
Target Start/End: Complemental strand, 23435494 - 23435352
Alignment:
Q  74 cttccacttacccac--ttttattcccaaggaa-gtggatgagaataaaaggttctcatgtaaatagtaataaaattgaaataactatccatataaccac 170  Q
    ||||||||||||||   |||||||||||| ||| ||||| | ||||||||| ||| ||||||||| ||| |||||| |||||||||| ||||||| ||||    
T  23435494 cttccacttacccatgattttattcccaaagaaagtggacgggaataaaagattcccatgtaaatggtactaaaatggaaataactacccatatacccac 23435395  T
Q  171 tatcacaaataattcccatgaatctcacaattatttaccaaac 213  Q
    ||||||||| ||||||||||||||| |||||||||||||||||    
T  23435394 tatcacaaacaattcccatgaatctgacaattatttaccaaac 23435352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 213
Target Start/End: Complemental strand, 6469822 - 6469680
Alignment:
Q  74 cttccacttacccac--ttttattcccaaggaa-gtggatgagaataaaaggttctcatgtaaatagtaataaaattgaaataactatccatataaccac 170  Q
    ||||||||||||||   |||||||||||| ||| ||||  | ||||||||| ||| ||||||||| ||| |||||| |||||||||| ||||||| ||||    
T  6469822 cttccacttacccatgattttattcccaaagaaagtgggcgggaataaaagattcccatgtaaatggtactaaaatagaaataactacccatatacccac 6469723  T
Q  171 tatcacaaataattcccatgaatctcacaattatttaccaaac 213  Q
    ||||||||| ||||||||||||||| |||||||||||||||||    
T  6469722 tatcacaaacaattcccatgaatctgacaattatttaccaaac 6469680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 213
Target Start/End: Original strand, 25989998 - 25990140
Alignment:
Q  74 cttccacttacccac--ttttattcccaaggaa-gtggatgagaataaaaggttctcatgtaaatagtaataaaattgaaataactatccatataaccac 170  Q
    ||||||||||||||   |||||||||||| ||| ||||  | ||||||||| ||| ||||||||| ||| |||||| |||||||||| ||||||| ||||    
T  25989998 cttccacttacccatgattttattcccaaagaaagtgggcgggaataaaagattcccatgtaaatggtactaaaatggaaataactacccatatacccac 25990097  T
Q  171 tatcacaaataattcccatgaatctcacaattatttaccaaac 213  Q
    ||||||||| ||||||||||||||| |||||||||||||||||    
T  25990098 tatcacaaacaattcccatgaatctgacaattatttaccaaac 25990140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 213
Target Start/End: Complemental strand, 42927601 - 42927459
Alignment:
Q  74 cttccacttacccac--ttttattcccaaggaa-gtggatgagaataaaaggttctcatgtaaatagtaataaaattgaaataactatccatataaccac 170  Q
    ||||||||||||||   |||||||||||| ||| ||||  | ||||||||| ||| ||||||||| ||| |||||| |||||||||| ||||||| ||||    
T  42927601 cttccacttacccatgattttattcccaaagaaagtgggcgggaataaaagattcccatgtaaatggtactaaaatggaaataactacccatatacccac 42927502  T
Q  171 tatcacaaataattcccatgaatctcacaattatttaccaaac 213  Q
    ||||||||| ||||||||||||||| |||||||||||||||||    
T  42927501 tatcacaaacaattcccatgaatctgacaattatttaccaaac 42927459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 89 - 205
Target Start/End: Original strand, 39624 - 39740
Alignment:
Q  89 ttttattcccaaggaagtggatgagaataaaaggttctcatgtaaatagtaataaaattgaaataactatccatataaccactatcacaaataattccca 188  Q
    ||||||||| |||||||||| || ||||||||||||| ||||||||||||||||||||||||| |||||  |||||| |||||||||||||||||| |||    
T  39624 ttttattcctaaggaagtgggtgggaataaaaggttcccatgtaaatagtaataaaattgaaacaactactcatatagccactatcacaaataattacca 39723  T
Q  189 tgaatctcacaattatt 205  Q
    |||| || |||||||||    
T  39724 tgaacctgacaattatt 39740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 89 - 205
Target Start/End: Original strand, 46820 - 46936
Alignment:
Q  89 ttttattcccaaggaagtggatgagaataaaaggttctcatgtaaatagtaataaaattgaaataactatccatataaccactatcacaaataattccca 188  Q
    ||||||||| |||||||||| || ||||||||||||| ||||||||||||||||||||||||| |||||  |||||| |||||||||||||||||| |||    
T  46820 ttttattcctaaggaagtgggtgggaataaaaggttcccatgtaaatagtaataaaattgaaacaactactcatatacccactatcacaaataattacca 46919  T
Q  189 tgaatctcacaattatt 205  Q
    |||| || |||||||||    
T  46920 tgaacctgacaattatt 46936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 8e-33; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 74 - 213
Target Start/End: Complemental strand, 2552802 - 2552660
Alignment:
Q  74 cttccacttacccac--ttttattcccaaggaa-gtggatgagaataaaaggttctcatgtaaatagtaataaaattgaaataactatccatataaccac 170  Q
    ||||||||||||||   |||||||||||| ||| ||||| | ||||||||| ||| ||||||||| ||| |||||| |||||||||| ||||||| ||||    
T  2552802 cttccacttacccatgattttattcccaaagaaagtggacgggaataaaagattcccatgtaaatggtactaaaatggaaataactacccatatacccac 2552703  T
Q  171 tatcacaaataattcccatgaatctcacaattatttaccaaac 213  Q
    ||||||||| ||||||||||||||| |||||||||||||||||    
T  2552702 tatcacaaacaattcccatgaatctgacaattatttaccaaac 2552660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 74 - 213
Target Start/End: Complemental strand, 4087798 - 4087656
Alignment:
Q  74 cttccacttacccac--ttttattcccaaggaa-gtggatgagaataaaaggttctcatgtaaatagtaataaaattgaaataactatccatataaccac 170  Q
    ||||||||||||||   |||||||||||| ||| ||||| | ||||||||| ||| ||||||||| ||| |||||| |||||||||| ||||||| ||||    
T  4087798 cttccacttacccatgattttattcccaaagaaagtggacgggaataaaagattcccatgtaaatggtactaaaatggaaataactacccatatacccac 4087699  T
Q  171 tatcacaaataattcccatgaatctcacaattatttaccaaac 213  Q
    ||||||||| ||||||||||||||| |||||||||||||||||    
T  4087698 tatcacaaacaattcccatgaatctgacaattatttaccaaac 4087656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 74 - 213
Target Start/End: Original strand, 46107106 - 46107248
Alignment:
Q  74 cttccacttacccac--ttttattcccaaggaa-gtggatgagaataaaaggttctcatgtaaatagtaataaaattgaaataactatccatataaccac 170  Q
    ||||||||||||||   |||||||||||| ||| ||||  | ||||||||| ||||||||||||| ||| |||||| |||||||||| ||||||| ||||    
T  46107106 cttccacttacccatgattttattcccaaagaaagtgggcgggaataaaagattctcatgtaaatggtactaaaatggaaataactacccatatacccac 46107205  T
Q  171 tatcacaaataattcccatgaatctcacaattatttaccaaac 213  Q
    ||||||||| ||||||||||||||| |||||||||||||||||    
T  46107206 tatcacaaacaattcccatgaatctgacaattatttaccaaac 46107248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 213
Target Start/End: Original strand, 8240097 - 8240239
Alignment:
Q  74 cttccacttacccac--ttttattcccaaggaa-gtggatgagaataaaaggttctcatgtaaatagtaataaaattgaaataactatccatataaccac 170  Q
    ||||||||||||||   |||||||||||| ||| ||||  | ||||||||| ||| ||||||||| ||| |||||| |||||||||| ||||||| ||||    
T  8240097 cttccacttacccatgattttattcccaaagaaagtgggcgggaataaaagattcccatgtaaatggtactaaaatggaaataactacccatatatccac 8240196  T
Q  171 tatcacaaataattcccatgaatctcacaattatttaccaaac 213  Q
    ||||||||| ||||||||||||||| |||||||||||||||||    
T  8240197 tatcacaaacaattcccatgaatctgacaattatttaccaaac 8240239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 213
Target Start/End: Original strand, 39151093 - 39151235
Alignment:
Q  74 cttccacttacccac--ttttattcccaaggaa-gtggatgagaataaaaggttctcatgtaaatagtaataaaattgaaataactatccatataaccac 170  Q
    ||||||||||||||   |||||||||||| ||| ||||  | ||||||||| ||| ||||||||| ||| |||||| |||||||||| ||||||| ||||    
T  39151093 cttccacttacccatgattttattcccaaagaaagtgggcgggaataaaagattcccatgtaaatggtactaaaatggaaataactacccatatacccac 39151192  T
Q  171 tatcacaaataattcccatgaatctcacaattatttaccaaac 213  Q
    ||||||||| ||||||||||||||| |||||||||||||||||    
T  39151193 tatcacaaacaattcccatgaatctgacaattatttaccaaac 39151235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 213
Target Start/End: Complemental strand, 39258953 - 39258811
Alignment:
Q  74 cttccacttacccac--ttttattcccaaggaa-gtggatgagaataaaaggttctcatgtaaatagtaataaaattgaaataactatccatataaccac 170  Q
    ||||||||||||||   |||||||||||| ||| ||||| | ||||||||| ||| ||||||||| ||| |||||| |||||||||| ||| ||| ||||    
T  39258953 cttccacttacccatgattttattcccaaagaaagtggacgggaataaaagattcccatgtaaatggtactaaaatggaaataactacccaaatacccac 39258854  T
Q  171 tatcacaaataattcccatgaatctcacaattatttaccaaac 213  Q
    ||||||||| ||||||||||||||| |||||||||||||||||    
T  39258853 tatcacaaacaattcccatgaatctgacaattatttaccaaac 39258811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 9737205 - 9737280
Alignment:
Q  140 ataaaattgaaataactatccatataa--ccactatcacaaataattcccatgaatctcacaattatttaccaaac 213  Q
    |||||||||||||||||| |||||||   ||||||||||||||||| ||||| ||||| |||||||||||| ||||    
T  9737205 ataaaattgaaataactacccatatatacccactatcacaaataatgcccataaatctgacaattatttacaaaac 9737280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 118 - 211
Target Start/End: Original strand, 9457496 - 9457589
Alignment:
Q  118 aaaggttctcatgtaaatagtaataaaattgaaataactatccatataaccactatcacaaataattcccatgaatctcacaattatttaccaa 211  Q
    |||||||| ||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||  |||||||||||||||||||||||||    
T  9457496 aaaggttcccatataaatagtaataaaattgaaataactacccatatatccactatcacaaataattttcatgaatctcacaattatttaccaa 9457589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 75 - 213
Target Start/End: Complemental strand, 2355422 - 2355281
Alignment:
Q  75 ttccacttacccac--ttttattcccaaggaa-gtggatgagaataaaaggttctcatgtaaatagtaataaaattgaaataactatccatataaccact 171  Q
    |||||||||||||   |||||||||||| ||| ||||  | ||||||||| ||| ||||||||| ||| |||||| |||||||||| ||||||| |||||    
T  2355422 ttccacttacccatgattttattcccaaagaaagtggccgggaataaaagattcccatgtaaatggtactaaaatggaaataactacccatatacccact 2355323  T
Q  172 atcacaaataattcccatgaatctcacaattatttaccaaac 213  Q
    |||||||| ||||||||||||||| |||||||||||||||||    
T  2355322 atcacaaacaattcccatgaatctgacaattatttaccaaac 2355281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 113 - 213
Target Start/End: Complemental strand, 32858820 - 32858720
Alignment:
Q  113 gaataaaaggttctcatgtaaatagtaataaaattgaaataactatccatataaccactatcacaaataattcccatgaatctcacaattatttaccaaa 212  Q
    ||||||||| ||| ||||||||| ||| |||||| |||||||||| ||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||    
T  32858820 gaataaaagattcccatgtaaatggtactaaaatggaaataactacccatatacccactatcacaaacaattcccatgaatctgacaattatttaccaaa 32858721  T
Q  213 c 213  Q
    |    
T  32858720 c 32858720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 213
Target Start/End: Original strand, 37549836 - 37549978
Alignment:
Q  74 cttccacttacccac--ttttattcccaaggaa-gtggatgagaataaaaggttctcatgtaaatagtaataaaattgaaataactatccatataaccac 170  Q
    ||||||||||||||   |||||||||||| ||| ||||  | ||||||||| ||| ||||||||| ||| |||||| |||||||||| ||||||| ||||    
T  37549836 cttccacttacccatgattttattcccaaagaaagtgggcgggaataaaagattcccatgtaaatggtactaaaatggaaataactacccatatacccac 37549935  T
Q  171 tatcacaaataattcccatgaatctcacaattatttaccaaac 213  Q
    ||||||||| ||||||||||||||| |||||||||||||||||    
T  37549936 tatcacaaacaattcccatgaatctgacaattatttaccaaac 37549978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 213
Target Start/End: Original strand, 41851477 - 41851619
Alignment:
Q  74 cttccacttacccac--ttttattcccaaggaa-gtggatgagaataaaaggttctcatgtaaatagtaataaaattgaaataactatccatataaccac 170  Q
    ||||||||||||||   |||||||||||| ||| ||||| | ||||||||| ||| ||||||||| ||| |||||| |||||||||| ||||||| ||||    
T  41851477 cttccacttacccatgattttattcccaaagaaagtggacgggaataaaagattcccatgtaaatggtactaaaatggaaataactacccatatacccac 41851576  T
Q  171 tatcacaaataattcccatgaatctcacaattatttaccaaac 213  Q
    ||||||||| ||||||||||||||| ||||||||||| |||||    
T  41851577 tatcacaaacaattcccatgaatctgacaattatttatcaaac 41851619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 213
Target Start/End: Complemental strand, 42883257 - 42883115
Alignment:
Q  74 cttccacttacccac--ttttattcccaaggaa-gtggatgagaataaaaggttctcatgtaaatagtaataaaattgaaataactatccatataaccac 170  Q
    ||||||||||||||   |||||||||||| ||| ||||  | ||||||||| ||| ||||||||| ||| |||||| |||||||||| ||||||| ||||    
T  42883257 cttccacttacccatgattttattcccaaagaaagtgggcgggaataaaagattcccatgtaaatggtactaaaatggaaataactacccatatacccac 42883158  T
Q  171 tatcacaaataattcccatgaatctcacaattatttaccaaac 213  Q
    ||||||||| ||||||||||||||| |||||||||||||||||    
T  42883157 tatcacaaacaattcccatgaatctgacaattatttaccaaac 42883115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 35709068 - 35709129
Alignment:
Q  170 ctatcacaaataattcccatgaatctcacaattatttaccaaacccaaattttaaagaatacc 232  Q
    |||||| |||||||| ||| |||||| ||||||||||||||||| || ||||||||| |||||    
T  35709068 ctatcaaaaataatttcca-gaatctgacaattatttaccaaacacagattttaaagtatacc 35709129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 213
Target Start/End: Original strand, 732251 - 732393
Alignment:
Q  74 cttccacttacccac--ttttattcccaaggaa-gtggatgagaataaaaggttctcatgtaaatagtaataaaattgaaataactatccatataaccac 170  Q
    ||||||||||||||   |||||||||||| ||| ||||| | ||||||||| ||| ||||||||| ||| |||||| |||||||||| ||||||| ||||    
T  732251 cttccacttacccatgattttattcccaaagaaagtggacgggaataaaagattcccatgtaaatggtactaaaatggaaataactacccatatacccac 732350  T
Q  171 tatcacaaataattcccatgaatctcacaattatttaccaaac 213  Q
    ||||||||| ||||| ||||||||| |||||||||||||||||    
T  732351 tatcacaaacaattctcatgaatctgacaattatttaccaaac 732393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 74 - 213
Target Start/End: Original strand, 8436358 - 8436500
Alignment:
Q  74 cttccacttacccac--ttttattcccaaggaa-gtggatgagaataaaaggttctcatgtaaatagtaataaaattgaaataactatccatataaccac 170  Q
    ||||||||||||||   |||||||||||| ||| ||||  | ||||||||| |||  |||||||| ||| |||||| |||||||||| ||||||| ||||    
T  8436358 cttccacttacccatgattttattcccaaagaaagtgggcgggaataaaagattcctatgtaaatggtactaaaatggaaataactacccatatacccac 8436457  T
Q  171 tatcacaaataattcccatgaatctcacaattatttaccaaac 213  Q
    ||||||||| ||||||||||||||| |||||||||||||||||    
T  8436458 tatcacaaacaattcccatgaatctgacaattatttaccaaac 8436500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 213
Target Start/End: Original strand, 10254796 - 10254938
Alignment:
Q  74 cttccacttacccac--ttttattcccaaggaa-gtggatgagaataaaaggttctcatgtaaatagtaataaaattgaaataactatccatataaccac 170  Q
    ||||||||||||||   |||||||||||| ||| ||||  | ||||||||| ||| ||||||||| ||| |||||| |||||||||| ||||||| ||||    
T  10254796 cttccacttacccatgattttattcccaaagaaagtgggcgggaataaaagattcccatgtaaatggtactaaaatggaaataactacccatatacccac 10254895  T
Q  171 tatcacaaataattcccatgaatctcacaattatttaccaaac 213  Q
    ||||||||| ||||||||||||||| |||||||||||||||||    
T  10254896 tatcacaaacaattcccatgaatctgacaattatttaccaaac 10254938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 213
Target Start/End: Complemental strand, 36371250 - 36371108
Alignment:
Q  74 cttccacttacccac--ttttattcccaaggaa-gtggatgagaataaaaggttctcatgtaaatagtaataaaattgaaataactatccatataaccac 170  Q
    ||||||||||||||   |||||||||||| ||| ||||  | ||||||||| ||| ||||||||| ||| |||||| |||||||||| ||||||| ||||    
T  36371250 cttccacttacccatgattttattcccaaagaaagtgggcgggaataaaagattcccatgtaaatggtactaaaatggaaataactacccatatacccac 36371151  T
Q  171 tatcacaaataattcccatgaatctcacaattatttaccaaac 213  Q
    ||||||||| ||||||||||||||| |||||||||||||||||    
T  36371150 tatcacaaacaattcccatgaatctgacaattatttaccaaac 36371108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 33527490 - 33527429
Alignment:
Q  99 aaggaagtggatgagaataaaaggttctcatgtaaatagtaataaaattgaaataactatcc 160  Q
    |||||||||| |  |||||||| |||||||| ||||||| |||||||||||| ||| |||||    
T  33527490 aaggaagtgggtaggaataaaatgttctcatataaatagaaataaaattgaagtaattatcc 33527429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University