View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5749_low_3 (Length: 751)
Name: NF5749_low_3
Description: NF5749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5749_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-154; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 89 - 428
Target Start/End: Complemental strand, 29386065 - 29385726
Alignment:
| Q |
89 |
aaaaccctcattaggtaagcgtccacttcccatttttgtggaagtagccttgtgggaactttgaattcactatttctccaccccaatgagtctcttgtgc |
188 |
Q |
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| T |
29386065 |
aaaaccctcattaggtaagtgtccacttcccatttgtgtggaagtagccttgtgggaactttgaattcactatttctccaccccaatgagtctcctgtgc |
29385966 |
T |
|
| Q |
189 |
agaatccttcatgcttgtgaatatagaggatggccaataaccaagatagtttccagttccaaattcaagccaccaattttgactcactggatgcttcacn |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29385965 |
agaatccttcatgcttgtgaatatagaggatggccaataaccaagatagtttccagttccaaattcaagccaccaattttgactcactggatgcttcaca |
29385866 |
T |
|
| Q |
289 |
nnnnnnnnnnnnnnnnctcaaactaaacctccaattcacctttttgttttatgacaattttaagttactcaaagagagacatatatgaagagcaatatat |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29385865 |
aaaacaaaagaaaaaactcaaactaaacctccaattcacctttttgttttatgacaattttaagttactcaaagagagacatatatgaagagcaatatat |
29385766 |
T |
|
| Q |
389 |
gtttgctagacaaaaagaggaaaataaaggtgccagggtg |
428 |
Q |
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| T |
29385765 |
gtttgctagacaaaaagaggaaaataaaggtgccagggtg |
29385726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 50 - 284
Target Start/End: Complemental strand, 29367587 - 29367354
Alignment:
| Q |
50 |
atctacaacttcaacattcttaaaatatgcagcttttctaaaaccctcattaggtaagcgtccacttcccatttttgtggaagtagccttgtgggaactt |
149 |
Q |
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| T |
29367587 |
atctacaactccaatattcttaaaatatgcagcttttctaaaaccctcatcaggcaagtgtccactacccatttgggtagaagtagc-ttgtggaaactt |
29367489 |
T |
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| Q |
150 |
tgaattcactatttctccaccccaatgagtctcttgtgcagaatccttcatgcttgtgaatatagaggatggccaataaccaagatagtttccagttcca |
249 |
Q |
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|||||| | ||||||||||||||||||| ||||| |||| |||||||| | ||||||||| || |||||||| || |||||||| ||||||||| || |
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| T |
29367488 |
tgaatttattatttctccaccccaatgaacctcttcagcaggatccttcaagtgtgtgaatatggaagatggccagtacccaagataatttccagttgca |
29367389 |
T |
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| Q |
250 |
aattcaagccaccaattttgactcactggatgctt |
284 |
Q |
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|||||||||||||||||| | || |||||||||| |
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| T |
29367388 |
aattcaagccaccaatttccagtccctggatgctt |
29367354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 544 - 617
Target Start/End: Complemental strand, 29385615 - 29385542
Alignment:
| Q |
544 |
gtttataaagtgatcagaaagagattgttaattagtgcaatttactttgcactttcattcactcacttgattca |
617 |
Q |
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| T |
29385615 |
gtttataaagtgatcagaaagagattgttaattagtgcaatttactttgcactttcattcactcacttgattca |
29385542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 204 - 266
Target Start/End: Original strand, 29211267 - 29211329
Alignment:
| Q |
204 |
tgtgaatatagaggatggccaataaccaagatagtttccagttccaaattcaagccaccaatt |
266 |
Q |
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|||||||| |||||||||||||| |||| ||||||||| |||| |||||||||||||||| |
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| T |
29211267 |
tgtgaatagggaggatggccaatatccaattaagtttccagatccatattcaagccaccaatt |
29211329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 575 - 631
Target Start/End: Complemental strand, 17853323 - 17853268
Alignment:
| Q |
575 |
ttagtgcaatttactttgcactttcattcactcacttgattcaattgattcactttg |
631 |
Q |
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| T |
17853323 |
ttagtgcaattca-tttgcactttcattcactcacttgatacaattgattcactttg |
17853268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 575 - 616
Target Start/End: Original strand, 42055758 - 42055799
Alignment:
| Q |
575 |
ttagtgcaatttactttgcactttcattcactcacttgattc |
616 |
Q |
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| T |
42055758 |
ttagtgcaattcactttacactttcattcactcacttgattc |
42055799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 202 - 266
Target Start/End: Original strand, 30905816 - 30905880
Alignment:
| Q |
202 |
cttgtgaatatagaggatggccaataaccaagatagtttccagttccaaattcaagccaccaatt |
266 |
Q |
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|||||||| | ||||||||||||||| |||| |||||||| ||||||||||||||||||||| |
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| T |
30905816 |
cttgtgaacaaagaggatggccaatatccaattatgtttccagatccaaattcaagccaccaatt |
30905880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 192 - 266
Target Start/End: Original strand, 30916509 - 30916583
Alignment:
| Q |
192 |
atccttcatgcttgtgaatatagaggatggccaataaccaagatagtttccagttccaaattcaagccaccaatt |
266 |
Q |
| |
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|||||| | ||||||||| | ||||||||||||||| |||| |||||||| |||| |||||||||||||||| |
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| T |
30916509 |
atcctttaagcttgtgaacaaagaggatggccaatatccaattatgtttccagatccatattcaagccaccaatt |
30916583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 192 - 266
Target Start/End: Original strand, 30925642 - 30925716
Alignment:
| Q |
192 |
atccttcatgcttgtgaatatagaggatggccaataaccaagatagtttccagttccaaattcaagccaccaatt |
266 |
Q |
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|||||| | ||||||||| | ||||||||||||||| |||| |||||||| |||| |||||||||||||||| |
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| T |
30925642 |
atcctttaagcttgtgaacaaagaggatggccaatatccaattatgtttccagatccatattcaagccaccaatt |
30925716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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